RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 JSRP1Q96MG2 331 aaPredicted RBP8.57□□□□□ -1.04
COL28A1-201ENST00000399429 HHIPQ96QV1 700 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 UBL7Q96S82 380 aaPredicted RBP8.57□□□□□ -1.04
COL28A1-201ENST00000399429 EXOSC3Q9NQT5 275 aaKnown RBP8.57□□□□□ -1.04
COL28A1-201ENST00000399429 ZNF443Q9Y2A4 671 aaPredicted RBP8.57□□□□□ -1.04
COL28A1-201ENST00000399429 RP1L1Q8IWN7 2480 aaPredicted RBP8.57□□□□□ -1.04
COL28A1-201ENST00000399429 A0A1W2PS29 197 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 NUDT19A8MXV4 375 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 GFYI3L273 518 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 CTNSO60931 367 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 RHOP08100 348 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 JMJD7P0C870 316 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 HOXB3P14651 431 aaPredicted RBP8.57□□□□□ -1.04
COL28A1-201ENST00000399429 ZNF20P17024 532 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 H2BFSP57053 126 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 MAP2K5Q13163 448 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 DEFB134Q4QY38 66 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 DEFB132Q7Z7B7 95 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 TRAPPC6BQ86SZ2 158 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 TRAM1L1Q8N609 369 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 RASGEF1AQ8N9B8 481 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 OR2L8Q8NGY9 312 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 NUS1Q96E22 293 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 PTCHD1Q96NR3 888 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 AMDHD1Q96NU7 426 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 CHST6Q9GZX3 395 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 MMP26Q9NRE1 261 aa8.57□□□□□ -1.04
COL28A1-201ENST00000399429 ADARB2Q9NS39 739 aaKnown RBP8.57□□□□□ -1.04
COL28A1-201ENST00000399429 MRPL22Q9NWU5 206 aaKnown RBP8.57□□□□□ -1.04
COL28A1-201ENST00000399429 ING1Q9UK53 422 aaPredicted RBP8.57□□□□□ -1.04
COL28A1-201ENST00000399429 MIA3Q5JRA6 1907 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 TRAV1-2A0A0B4J238 106 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 C17orf113A0A1B0GUU1 675 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 B3GALT2O43825 422 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 EIF1BO60739 113 aaKnown RBP8.56□□□□□ -1.04
COL28A1-201ENST00000399429 PRAMEF4O60810 478 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 SERPINA2P20848 420 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 SLC2A5P22732 501 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 EIF1P41567 113 aaKnown RBP8.56□□□□□ -1.04
COL28A1-201ENST00000399429 F2RL1P55085 397 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 MAT1AQ00266 395 aaKnown RBP8.56□□□□□ -1.04
COL28A1-201ENST00000399429 KCNAB1Q14722 419 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 SMAD2Q15796 467 aaKnown RBP8.56□□□□□ -1.04
COL28A1-201ENST00000399429 ZNF124Q15973 351 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 CCL14Q16627 93 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 MRPL2Q5T653 305 aaKnown RBP8.56□□□□□ -1.04
COL28A1-201ENST00000399429 PRAMEF9Q5VWM5 478 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 TSEN54Q7Z6J9 526 aaKnown RBP8.56□□□□□ -1.04
COL28A1-201ENST00000399429 C15orf54Q8N8G6 183 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 OR13C3Q8NGS6 347 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 METTL21AQ8WXB1 218 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 MIB2Q96AX9 1013 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 ZNF587Q96SQ5 575 aaPredicted RBP8.56□□□□□ -1.04
COL28A1-201ENST00000399429 ST6GALNAC5Q9BVH7 336 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 TMPRSS13Q9BYE2 586 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 LRFN1Q9P244 771 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 STEAP1Q9UHE8 339 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 PCYT1BQ9Y5K3 369 aaPredicted RBP8.56□□□□□ -1.04
COL28A1-201ENST00000399429 ETV7Q9Y603 341 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 DNAJC25-GNG10A0A024R161 153 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 ANKRD20A5PA0PJZ0 165 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 RDH16O75452 317 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 HCKP08631 526 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 PI3P19957 117 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 CXCR1P25024 350 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 PCP4P48539 62 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 CAV2P51636 162 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 PDX1P52945 283 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 RNF4P78317 190 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 DHRS2Q13268 280 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 OR2T2Q6IF00 324 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 PLPP6Q8IY26 295 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 LRRC25Q8N386 305 aaPredicted RBP8.56□□□□□ -1.04
COL28A1-201ENST00000399429 OR2G2Q8NGZ5 317 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 SNIP1Q8TAD8 396 aaKnown RBP8.56□□□□□ -1.04
COL28A1-201ENST00000399429 HSD17B8Q92506 261 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 ZG16BQ96DA0 208 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 FZD3Q9NPG1 666 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 CMC2Q9NRP2 79 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 NDOR1Q9UHB4 597 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 KCND3Q9UK17 655 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 TMEM14AQ9Y6G1 99 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 ICOSLGO75144 302 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 CD53P19397 219 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 RPS27P42677 84 aaKnown RBP8.56□□□□□ -1.04
COL28A1-201ENST00000399429 ZNF84P51523 738 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 CRYBA2P53672 197 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 AGERQ15109 404 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 PDGFRLQ15198 375 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 CHRFAM7AQ494W8 412 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 GLYATL3Q5SZD4 288 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 ZNF770Q6IQ21 691 aaPredicted RBP8.56□□□□□ -1.04
COL28A1-201ENST00000399429 SLC16A11Q8NCK7 471 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 OR5H2Q8NGV7 314 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 LCN9Q8WX39 176 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 THRSPQ92748 146 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 SEC11CQ9BY50 192 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 MSRAQ9UJ68 235 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 KCNK6Q9Y257 313 aa8.56□□□□□ -1.04
COL28A1-201ENST00000399429 H7C1C5 153 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms