RNA–Protein interactions for RNA: ENST00000374943.8

HLA-DQB1-201, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

BASIC

Gene HLA-DQB1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-201ENST00000374943 ATF6BQ99941 703 aa16.19■□□□□ 0.18
HLA-DQB1-201ENST00000374943 CDCP1Q9H5V8 836 aa16.19■□□□□ 0.18
HLA-DQB1-201ENST00000374943 ABCB10Q9NRK6 738 aa16.19■□□□□ 0.18
HLA-DQB1-201ENST00000374943 B3GALT5Q9Y2C3 310 aa16.19■□□□□ 0.18
HLA-DQB1-201ENST00000374943 PCDHGA1Q9Y5H4 931 aa16.19■□□□□ 0.18
HLA-DQB1-201ENST00000374943 CCDC187A0A096LP49 1063 aa16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 IGLV1-36A0A0B4J1U3 117 aa16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 SLC22A23A1A5C7 686 aa16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 C9orf172C9J069 976 aa16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 GATBO75879 557 aaKnown RBP16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 ABHD16AO95870 558 aa16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 TACSTD2P09758 323 aa16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 TCN2P20062 427 aa16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 MYL9P24844 172 aa16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 DAP3P51398 398 aaKnown RBP16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 CAV3P56539 151 aa16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 EGR3Q06889 387 aa16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 ACSM3Q53FZ2 586 aa16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 CCDC157Q569K6 752 aa16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 STEAP3Q658P3 488 aa16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 PLCZ1Q86YW0 608 aa16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 ASB10Q8WXI3 467 aa16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 ACOT12Q8WYK0 555 aa16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 RNF166Q96A37 237 aaPredicted RBP16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 PPIL3Q9H2H8 161 aaKnown RBP16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 FARSAQ9Y285 508 aaKnown RBP16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 KLHDC2Q9Y2U9 406 aa16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 FREM3P0C091 2139 aa16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 PCSK5Q92824 1860 aa16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 DOCK10Q96BY6 2186 aa16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 TRBV2A0A0J9YWF9 115 aa16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 TVP23AA6NH52 213 aa16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 SHISA8B8ZZ34 492 aa16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 AKR7A3O95154 331 aa16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 TFPIP10646 304 aa16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 ALOX5APP20292 161 aa16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 EDNRAP25101 427 aa16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 TLE3Q04726 772 aa16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 SELENBP1Q13228 472 aa16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 INPP5JQ15735 1006 aaPredicted RBP16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 PRAMEF20Q5VT98 475 aa16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 FAM220AQ7Z4H9 259 aa16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 FAM83FQ8NEG4 500 aaPredicted RBP16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 NLGN4YQ8NFZ3 816 aaPredicted RBP16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 PHYHIPQ92561 330 aa16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 ADAD1Q96M93 576 aaKnown RBP16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 MFRPQ9BY79 579 aa16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 CCDC86Q9H6F5 360 aaKnown RBP16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 MRM2Q9UI43 246 aaKnown RBP16.18■□□□□ 0.18
HLA-DQB1-201ENST00000374943 TRAV1-2A0A0B4J238 106 aa16.17■□□□□ 0.18
HLA-DQB1-201ENST00000374943 SMIM30A4D0T7 59 aa16.17■□□□□ 0.18
HLA-DQB1-201ENST00000374943 ANKRD33BA6NCL7 494 aa16.17■□□□□ 0.18
HLA-DQB1-201ENST00000374943 H3BML4 177 aa16.17■□□□□ 0.18
HLA-DQB1-201ENST00000374943 SNPHO15079 494 aa16.17■□□□□ 0.18
HLA-DQB1-201ENST00000374943 MT-CO3P00414 261 aa16.17■□□□□ 0.18
HLA-DQB1-201ENST00000374943 SHC1P29353 583 aa16.17■□□□□ 0.18
HLA-DQB1-201ENST00000374943 CRABP1P29762 137 aa16.17■□□□□ 0.18
HLA-DQB1-201ENST00000374943 RPS18P62269 152 aaKnown RBP16.17■□□□□ 0.18
HLA-DQB1-201ENST00000374943 RPS11P62280 158 aaKnown RBP eCLIP16.17■□□□□ 0.18
HLA-DQB1-201ENST00000374943 MYBPHQ13203 477 aa16.17■□□□□ 0.18
HLA-DQB1-201ENST00000374943 GLYR1Q49A26 553 aaPredicted RBP16.17■□□□□ 0.18
HLA-DQB1-201ENST00000374943 ZMAT1Q5H9K5 638 aa16.17■□□□□ 0.18
HLA-DQB1-201ENST00000374943 HBMQ6B0K9 141 aa16.17■□□□□ 0.18
HLA-DQB1-201ENST00000374943 H3F3CQ6NXT2 135 aa16.17■□□□□ 0.18
HLA-DQB1-201ENST00000374943 MZT2AQ6P582 158 aa16.17■□□□□ 0.18
HLA-DQB1-201ENST00000374943 OR6N2Q8NGY6 317 aa16.17■□□□□ 0.18
HLA-DQB1-201ENST00000374943 KIAA1143Q96AT1 154 aaPredicted RBP16.17■□□□□ 0.18
HLA-DQB1-201ENST00000374943 KCTD12Q96CX2 325 aaKnown RBP16.17■□□□□ 0.18
HLA-DQB1-201ENST00000374943 SP140LQ9H930 580 aa16.17■□□□□ 0.18
HLA-DQB1-201ENST00000374943 PROK2Q9HC23 129 aa16.17■□□□□ 0.18
HLA-DQB1-201ENST00000374943 LAMP5Q9UJQ1 280 aa16.17■□□□□ 0.18
HLA-DQB1-201ENST00000374943 CACNA1HO95180 2353 aa16.17■□□□□ 0.18
HLA-DQB1-201ENST00000374943 A0A1W2PNU3 283 aaPredicted RBP16.16■□□□□ 0.18
HLA-DQB1-201ENST00000374943 NPIPA5E9PKD4 350 aa16.16■□□□□ 0.18
HLA-DQB1-201ENST00000374943 UPK3AO75631 287 aa16.16■□□□□ 0.18
HLA-DQB1-201ENST00000374943 NCR1O76036 304 aa16.16■□□□□ 0.18
HLA-DQB1-201ENST00000374943 KRT8P05787 483 aa16.16■□□□□ 0.18
HLA-DQB1-201ENST00000374943 CCL3P10147 92 aa16.16■□□□□ 0.18
HLA-DQB1-201ENST00000374943 HLA-DOBP13765 273 aa16.16■□□□□ 0.18
HLA-DQB1-201ENST00000374943 OTX2P32243 289 aa16.16■□□□□ 0.18
HLA-DQB1-201ENST00000374943 NUBP1P53384 320 aa16.16■□□□□ 0.18
HLA-DQB1-201ENST00000374943 RPS15P62841 145 aaKnown RBP16.16■□□□□ 0.18
HLA-DQB1-201ENST00000374943 HSF1Q00613 529 aa16.16■□□□□ 0.18
HLA-DQB1-201ENST00000374943 MELKQ14680 651 aa16.16■□□□□ 0.18
HLA-DQB1-201ENST00000374943 ZNF79Q15937 498 aa16.16■□□□□ 0.18
HLA-DQB1-201ENST00000374943 ZNF239Q16600 458 aaKnown RBP16.16■□□□□ 0.18
HLA-DQB1-201ENST00000374943 SLC22A10Q63ZE4 541 aa16.16■□□□□ 0.18
HLA-DQB1-201ENST00000374943 UNQ9370/PRO34162Q6UXP9 181 aa16.16■□□□□ 0.18
HLA-DQB1-201ENST00000374943 NR2C2APQ86WQ0 139 aa16.16■□□□□ 0.18
HLA-DQB1-201ENST00000374943 GTPBP8Q8N3Z3 284 aaPredicted RBP16.16■□□□□ 0.18
HLA-DQB1-201ENST00000374943 ESX1Q8N693 406 aa16.16■□□□□ 0.18
HLA-DQB1-201ENST00000374943 OTOSQ8NHW6 89 aa16.16■□□□□ 0.18
HLA-DQB1-201ENST00000374943 TTYH2Q9BSA4 534 aa16.16■□□□□ 0.18
HLA-DQB1-201ENST00000374943 FAM117AQ9C073 453 aa16.16■□□□□ 0.18
HLA-DQB1-201ENST00000374943 SRRQ9GZT4 340 aa16.16■□□□□ 0.18
HLA-DQB1-201ENST00000374943 HPF1Q9NWY4 346 aa16.16■□□□□ 0.18
HLA-DQB1-201ENST00000374943 NPIPA1Q9UND3 350 aa16.16■□□□□ 0.18
HLA-DQB1-201ENST00000374943 CENPBD1B2RD01 187 aa16.15■□□□□ 0.18
HLA-DQB1-201ENST00000374943 SLC16A7O60669 478 aa16.15■□□□□ 0.18
HLA-DQB1-201ENST00000374943 ARL6IP5O75915 188 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms