RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 PTOV1Q86YD1 416 aa18.02■□□□□ 0.48
CCDC88B-202ENST00000356786 Q96M85 177 aa18.02■□□□□ 0.48
CCDC88B-202ENST00000356786 GMEB2Q9UKD1 530 aa18.02■□□□□ 0.48
CCDC88B-202ENST00000356786 SCML1Q9UN30 329 aa18.02■□□□□ 0.48
CCDC88B-202ENST00000356786 HS3ST2Q9Y278 367 aa18.02■□□□□ 0.48
CCDC88B-202ENST00000356786 PCDHGA1Q9Y5H4 931 aa18.02■□□□□ 0.48
CCDC88B-202ENST00000356786 PRAMEF27A3QJZ7 478 aa18.02■□□□□ 0.47
CCDC88B-202ENST00000356786 MAOBP27338 520 aa18.02■□□□□ 0.47
CCDC88B-202ENST00000356786 CNN3Q15417 329 aaKnown RBP18.02■□□□□ 0.47
CCDC88B-202ENST00000356786 ZNF74Q16587 644 aa18.02■□□□□ 0.47
CCDC88B-202ENST00000356786 PRAMEF9Q5VWM5 478 aa18.02■□□□□ 0.47
CCDC88B-202ENST00000356786 ZNF705AQ6ZN79 300 aaPredicted RBP18.02■□□□□ 0.47
CCDC88B-202ENST00000356786 MRPL21Q7Z2W9 205 aaKnown RBP18.02■□□□□ 0.47
CCDC88B-202ENST00000356786 MFSD4AQ8N468 514 aa18.02■□□□□ 0.47
CCDC88B-202ENST00000356786 CLSTN3Q9BQT9 956 aa18.02■□□□□ 0.47
CCDC88B-202ENST00000356786 ZNF385DQ9H6B1 395 aa18.02■□□□□ 0.47
CCDC88B-202ENST00000356786 TAAR2Q9P1P5 351 aa18.02■□□□□ 0.47
CCDC88B-202ENST00000356786 TMEFF2Q9UIK5 374 aaPredicted RBP18.02■□□□□ 0.47
CCDC88B-202ENST00000356786 GPR171O14626 319 aa18.02■□□□□ 0.47
CCDC88B-202ENST00000356786 SLC2A10O95528 541 aa18.02■□□□□ 0.47
CCDC88B-202ENST00000356786 HNRNPA2B1P22626 353 aaKnown RBP18.02■□□□□ 0.47
CCDC88B-202ENST00000356786 LIPNQ5VXI9 398 aa18.02■□□□□ 0.47
CCDC88B-202ENST00000356786 ADGRE4PQ86SQ3 457 aa18.02■□□□□ 0.47
CCDC88B-202ENST00000356786 CPNE4Q96A23 557 aaPredicted RBP18.02■□□□□ 0.47
CCDC88B-202ENST00000356786 DOK1Q99704 481 aa18.02■□□□□ 0.47
CCDC88B-202ENST00000356786 NUDT22Q9BRQ3 303 aa18.02■□□□□ 0.47
CCDC88B-202ENST00000356786 TAF9BQ9HBM6 251 aa18.02■□□□□ 0.47
CCDC88B-202ENST00000356786 HRASLSQ9HDD0 168 aa18.02■□□□□ 0.47
CCDC88B-202ENST00000356786 ACOXLQ9NUZ1 547 aa18.02■□□□□ 0.47
CCDC88B-202ENST00000356786 SLC23A1Q9UHI7 598 aa18.02■□□□□ 0.47
CCDC88B-202ENST00000356786 MAGEB4O15481 346 aaPredicted RBP18.01■□□□□ 0.47
CCDC88B-202ENST00000356786 SOX18P35713 384 aa18.01■□□□□ 0.47
CCDC88B-202ENST00000356786 ACOT7LQ6ZUV0 252 aa18.01■□□□□ 0.47
CCDC88B-202ENST00000356786 RASD2Q96D21 266 aa18.01■□□□□ 0.47
CCDC88B-202ENST00000356786 ISYNA1Q9NPH2 558 aa18.01■□□□□ 0.47
CCDC88B-202ENST00000356786 FTCDNL1E5RQL4 147 aa18.01■□□□□ 0.47
CCDC88B-202ENST00000356786 CTSAP10619 480 aa18.01■□□□□ 0.47
CCDC88B-202ENST00000356786 OR2B8PP59922 312 aa18.01■□□□□ 0.47
CCDC88B-202ENST00000356786 CST9LP1Q5W188 147 aa18.01■□□□□ 0.47
CCDC88B-202ENST00000356786 MFSD12Q6NUT3 480 aa18.01■□□□□ 0.47
CCDC88B-202ENST00000356786 SPATA6Q9NWH7 488 aaPredicted RBP18.01■□□□□ 0.47
CCDC88B-202ENST00000356786 CGGBP1Q9UFW8 167 aaPredicted RBP18.01■□□□□ 0.47
CCDC88B-202ENST00000356786 PCYT1BQ9Y5K3 369 aaPredicted RBP18.01■□□□□ 0.47
CCDC88B-202ENST00000356786 VSTM5A8MXK1 200 aa18.01■□□□□ 0.47
CCDC88B-202ENST00000356786 H0YGG7 62 aa18.01■□□□□ 0.47
CCDC88B-202ENST00000356786 CD1EP15812 388 aa18.01■□□□□ 0.47
CCDC88B-202ENST00000356786 PDZD11Q5EBL8 140 aa18.01■□□□□ 0.47
CCDC88B-202ENST00000356786 OTUD1Q5VV17 481 aaPredicted RBP18.01■□□□□ 0.47
CCDC88B-202ENST00000356786 ZNF765Q7L2R6 523 aa18.01■□□□□ 0.47
CCDC88B-202ENST00000356786 PLXDC1Q8IUK5 500 aa18.01■□□□□ 0.47
CCDC88B-202ENST00000356786 SLC22A24Q8N4F4 322 aa18.01■□□□□ 0.47
CCDC88B-202ENST00000356786 UCN3Q969E3 161 aa18.01■□□□□ 0.47
CCDC88B-202ENST00000356786 M0R082 166 aa18.01■□□□□ 0.47
CCDC88B-202ENST00000356786 BHLHE40O14503 412 aa18.01■□□□□ 0.47
CCDC88B-202ENST00000356786 RD3LP0DJH9 198 aa18.01■□□□□ 0.47
CCDC88B-202ENST00000356786 NAGAP17050 411 aa18.01■□□□□ 0.47
CCDC88B-202ENST00000356786 ITGB8P26012 769 aa18.01■□□□□ 0.47
CCDC88B-202ENST00000356786 ECH1Q13011 328 aa18.01■□□□□ 0.47
CCDC88B-202ENST00000356786 FAM74A1Q5RGS3 127 aa18.01■□□□□ 0.47
CCDC88B-202ENST00000356786 C1orf198Q9H425 327 aa18.01■□□□□ 0.47
CCDC88B-202ENST00000356786 A0A0B4J203 849 aa18■□□□□ 0.47
CCDC88B-202ENST00000356786 SERINC4A6NH21 518 aa18■□□□□ 0.47
CCDC88B-202ENST00000356786 OR5H14A6NHG9 310 aa18■□□□□ 0.47
CCDC88B-202ENST00000356786 ZNF620Q6ZNG0 422 aa18■□□□□ 0.47
CCDC88B-202ENST00000356786 CDH26Q8IXH8 852 aa18■□□□□ 0.47
CCDC88B-202ENST00000356786 MFSD9Q8NBP5 474 aa18■□□□□ 0.47
CCDC88B-202ENST00000356786 CSF3RQ99062 836 aa18■□□□□ 0.47
CCDC88B-202ENST00000356786 P2RY10O00398 339 aa18■□□□□ 0.47
CCDC88B-202ENST00000356786 SLC48A1Q6P1K1 146 aa18■□□□□ 0.47
CCDC88B-202ENST00000356786 OR1M1Q8NGA1 313 aa18■□□□□ 0.47
CCDC88B-202ENST00000356786 PFN4Q8NHR9 129 aa18■□□□□ 0.47
CCDC88B-202ENST00000356786 ELF4Q99607 663 aaPredicted RBP18■□□□□ 0.47
CCDC88B-202ENST00000356786 H7C1Q1 480 aa18■□□□□ 0.47
CCDC88B-202ENST00000356786 IGHG1P01857 330 aa18■□□□□ 0.47
CCDC88B-202ENST00000356786 S100A8P05109 93 aa18■□□□□ 0.47
CCDC88B-202ENST00000356786 GNB3P16520 340 aa18■□□□□ 0.47
CCDC88B-202ENST00000356786 REEP5Q00765 189 aa18■□□□□ 0.47
CCDC88B-202ENST00000356786 CTBSQ01459 385 aa18■□□□□ 0.47
CCDC88B-202ENST00000356786 ZNF385BQ569K4 471 aa18■□□□□ 0.47
CCDC88B-202ENST00000356786 NANPQ8TBE9 248 aa18■□□□□ 0.47
CCDC88B-202ENST00000356786 RSC1A1Q92681 617 aa18■□□□□ 0.47
CCDC88B-202ENST00000356786 TIMM29Q9BSF4 260 aa18■□□□□ 0.47
CCDC88B-202ENST00000356786 SAGE1Q9NXZ1 904 aa18■□□□□ 0.47
CCDC88B-202ENST00000356786 BET1O15155 118 aa18■□□□□ 0.47
CCDC88B-202ENST00000356786 KLK8O60259 260 aa18■□□□□ 0.47
CCDC88B-202ENST00000356786 GLCEO94923 617 aa18■□□□□ 0.47
CCDC88B-202ENST00000356786 CALCBP10092 127 aa18■□□□□ 0.47
CCDC88B-202ENST00000356786 HNF4GQ14541 408 aa18■□□□□ 0.47
CCDC88B-202ENST00000356786 ZNF266Q14584 549 aa18■□□□□ 0.47
CCDC88B-202ENST00000356786 CST9Q5W186 159 aa18■□□□□ 0.47
CCDC88B-202ENST00000356786 SHISA6Q6ZSJ9 500 aa18■□□□□ 0.47
CCDC88B-202ENST00000356786 KLHDC8BQ8IXV7 354 aa18■□□□□ 0.47
CCDC88B-202ENST00000356786 ARHGAP9Q9BRR9 750 aa18■□□□□ 0.47
CCDC88B-202ENST00000356786 ANKRD61A6NGH8 418 aa17.99■□□□□ 0.47
CCDC88B-202ENST00000356786 LILRB3O75022 631 aa17.99■□□□□ 0.47
CCDC88B-202ENST00000356786 LPLP06858 475 aa17.99■□□□□ 0.47
CCDC88B-202ENST00000356786 ZNF93P35789 620 aaPredicted RBP17.99■□□□□ 0.47
CCDC88B-202ENST00000356786 SLC7A9P82251 487 aa17.99■□□□□ 0.47
CCDC88B-202ENST00000356786 MKXQ8IYA7 352 aa17.99■□□□□ 0.47
CCDC88B-202ENST00000356786 TMEM217Q8N7C4 229 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms