RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 CSF3RQ99062 836 aa8.02□□□□□ -1.12
RTN3-202ENST00000339997 TEAD3Q99594 435 aa8.02□□□□□ -1.12
RTN3-202ENST00000339997 NMNAT2Q9BZQ4 307 aa8.02□□□□□ -1.12
RTN3-202ENST00000339997 ANKRD10Q9NXR5 420 aa8.02□□□□□ -1.12
RTN3-202ENST00000339997 LUZP4Q9P127 313 aa8.02□□□□□ -1.12
RTN3-202ENST00000339997 SLC23A1Q9UHI7 598 aa8.02□□□□□ -1.12
RTN3-202ENST00000339997 CA14Q9ULX7 337 aa8.02□□□□□ -1.12
RTN3-202ENST00000339997 TP53TG5Q9Y2B4 290 aa8.02□□□□□ -1.12
RTN3-202ENST00000339997 KCNK2O95069 426 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 FCGR2AP12318 317 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 TMEM11P17152 192 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 CHATP28329 748 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 NTSR1P30989 418 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 GZMKP49863 264 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 HTD2P86397 168 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 RAB33AQ14088 237 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 IRF4Q15306 451 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 HNRNPA1L2Q32P51 320 aaKnown RBP8.02□□□□□ -1.13
RTN3-202ENST00000339997 UBE2NLQ5JXB2 153 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 OGFOD3Q6PK18 319 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 BADQ92934 168 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 LURAP1Q96LR2 239 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 CMSS1Q9BQ75 279 aaKnown RBP8.02□□□□□ -1.13
RTN3-202ENST00000339997 OR52A5Q9H2C5 316 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 POFUT1Q9H488 388 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 C11orf49Q9H6J7 331 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 SIRT5Q9NXA8 310 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 GFOD1Q9NXC2 390 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 ACAD8Q9UKU7 415 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 H0YIV9 168 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 SULT1C2O00338 296 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 SOX15O60248 233 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 GPR75O95800 540 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 CBX7O95931 251 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 MT-CO2P00403 227 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 EIF4EP06730 217 aaKnown RBP8.02□□□□□ -1.13
RTN3-202ENST00000339997 IRF2P14316 349 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 CRABP1P29762 137 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 TAS2R20P59543 309 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 KIAA0141Q14154 515 aaPredicted RBP8.02□□□□□ -1.13
RTN3-202ENST00000339997 TMEM176BQ3YBM2 270 aaPredicted RBP8.02□□□□□ -1.13
RTN3-202ENST00000339997 XKR7Q5GH72 579 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 EOGTQ5NDL2 527 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 TCTN3Q6NUS6 607 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 S100A7AQ86SG5 101 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 FAM3DQ96BQ1 224 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 RAB3CQ96E17 227 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 C12orf57Q99622 126 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 NELFAQ9H3P2 528 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 ERVMER34-1Q9H9K5 563 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 CBLCQ9ULV8 474 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 GAB2Q9UQC2 676 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 PIAS3Q9Y6X2 628 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 NUP98P52948 1817 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 CNOT1A5YKK6 2376 aaKnown RBP8.02□□□□□ -1.13
RTN3-202ENST00000339997 PRAMEF27A3QJZ7 478 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 MTCP1P56278 107 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 SEMA3BQ13214 749 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 RAB31Q13636 194 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 PDE7AQ13946 482 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 PLGLAQ15195 96 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 RNF151Q2KHN1 245 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 Q499Y3 187 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 LRIF1Q5T3J3 769 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 PRAMEF9Q5VWM5 478 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 NIPAL3Q6P499 406 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 FAM122BQ7Z309 247 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 TPRA1Q86W33 373 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 ZNF439Q8NDP4 499 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 SFT2D1Q8WV19 159 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 PDLIM5Q96HC4 596 aaKnown RBP8.02□□□□□ -1.13
RTN3-202ENST00000339997 OPALINQ96PE5 141 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 TMEM43Q9BTV4 400 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 TAS2R5Q9NYW4 299 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 ADAMTS5Q9UNA0 930 aa8.02□□□□□ -1.13
RTN3-202ENST00000339997 ZNF354AO60765 605 aaPredicted RBP8.01□□□□□ -1.13
RTN3-202ENST00000339997 MMP2P08253 660 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 RAB40ALP0C0E4 278 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 MGST1P10620 155 aaKnown RBP8.01□□□□□ -1.13
RTN3-202ENST00000339997 PRLHRP49683 370 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 GLYR1Q49A26 553 aaPredicted RBP8.01□□□□□ -1.13
RTN3-202ENST00000339997 USP51Q70EK9 711 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 SLC51BQ86UW2 128 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 OR5M1Q8NGP8 315 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 RAB40AQ8WXH6 277 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 RBMXL1Q96E39 390 aaKnown RBP8.01□□□□□ -1.13
RTN3-202ENST00000339997 GIMAP5Q96F15 307 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 PSD2Q9BQI7 771 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 TMEM59Q9BXS4 323 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 CPEB1Q9BZB8 566 aaKnown RBP8.01□□□□□ -1.13
RTN3-202ENST00000339997 NXF2Q9GZY0 626 aaKnown RBP8.01□□□□□ -1.13
RTN3-202ENST00000339997 PELI2Q9HAT8 420 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 SLC6A20Q9NP91 592 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 CREBZFQ9NS37 354 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 ASH2LQ9UBL3 628 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 ZNF337Q9Y3M9 751 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 IGHV3-20A0A0C4DH32 117 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 TRDV1A0A1B0GX56 115 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 SEMA4FO95754 770 aa8.01□□□□□ -1.13
RTN3-202ENST00000339997 CCR9P51686 369 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms