RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 TMEM236Q5W0B7 351 aa19.59■□□□□ 0.73
SDC3-202ENST00000339394 FBXW9Q5XUX1 488 aa19.59■□□□□ 0.73
SDC3-202ENST00000339394 FAM205BPQ63HN1 556 aa19.59■□□□□ 0.73
SDC3-202ENST00000339394 XKRXQ6PP77 449 aa19.59■□□□□ 0.73
SDC3-202ENST00000339394 C20orf196Q8IYI0 205 aa19.59■□□□□ 0.73
SDC3-202ENST00000339394 UBE2J2Q8N2K1 259 aa19.59■□□□□ 0.73
SDC3-202ENST00000339394 SYT14Q8NB59 555 aa19.59■□□□□ 0.73
SDC3-202ENST00000339394 HDAC2Q92769 488 aaKnown RBP19.59■□□□□ 0.73
SDC3-202ENST00000339394 LRR1Q96L50 414 aa19.59■□□□□ 0.73
SDC3-202ENST00000339394 GABARAPL3Q9BY60 117 aa19.59■□□□□ 0.73
SDC3-202ENST00000339394 RIBC2Q9H4K1 309 aa19.59■□□□□ 0.73
SDC3-202ENST00000339394 C8orf4Q9NR00 106 aa19.59■□□□□ 0.73
SDC3-202ENST00000339394 SLC7A10Q9NS82 523 aa19.59■□□□□ 0.73
SDC3-202ENST00000339394 FOXD3Q9UJU5 478 aaPredicted RBP19.59■□□□□ 0.73
SDC3-202ENST00000339394 A6NIZ1 184 aa19.58■□□□□ 0.73
SDC3-202ENST00000339394 OR6C65A6NJZ3 312 aa19.58■□□□□ 0.73
SDC3-202ENST00000339394 XKRYO14609 159 aa19.58■□□□□ 0.73
SDC3-202ENST00000339394 ARHGEF9O43307 516 aa19.58■□□□□ 0.73
SDC3-202ENST00000339394 UPK3AO75631 287 aa19.58■□□□□ 0.73
SDC3-202ENST00000339394 AGFG2O95081 481 aa19.58■□□□□ 0.73
SDC3-202ENST00000339394 HIST1H1CP16403 213 aaKnown RBP19.58■□□□□ 0.73
SDC3-202ENST00000339394 RAP1BP61224 184 aa19.58■□□□□ 0.73
SDC3-202ENST00000339394 RAP1AP62834 184 aa19.58■□□□□ 0.73
SDC3-202ENST00000339394 KRR1Q13601 381 aaKnown RBP19.58■□□□□ 0.73
SDC3-202ENST00000339394 ZIK1Q3SY52 487 aaPredicted RBP19.58■□□□□ 0.73
SDC3-202ENST00000339394 ACSM5Q6NUN0 579 aa19.58■□□□□ 0.73
SDC3-202ENST00000339394 ZNF474Q6S9Z5 364 aaPredicted RBP19.58■□□□□ 0.73
SDC3-202ENST00000339394 ZNF808Q8N4W9 903 aaPredicted RBP19.58■□□□□ 0.73
SDC3-202ENST00000339394 PACRGLQ8N7B6 248 aa19.58■□□□□ 0.73
SDC3-202ENST00000339394 KCNK17Q96T54 332 aa19.58■□□□□ 0.73
SDC3-202ENST00000339394 BAIAP2Q9UQB8 552 aa19.58■□□□□ 0.73
SDC3-202ENST00000339394 WIPF3A6NGB9 483 aa19.57■□□□□ 0.72
SDC3-202ENST00000339394 SNAP29O95721 258 aa19.57■□□□□ 0.72
SDC3-202ENST00000339394 CDH2P19022 906 aaPredicted RBP19.57■□□□□ 0.72
SDC3-202ENST00000339394 CSNK1A1P48729 337 aa19.57■□□□□ 0.72
SDC3-202ENST00000339394 PGGHGQ32M88 737 aa19.57■□□□□ 0.72
SDC3-202ENST00000339394 SLC25A35Q3KQZ1 300 aa19.57■□□□□ 0.72
SDC3-202ENST00000339394 PHYHD1Q5SRE7 291 aa19.57■□□□□ 0.72
SDC3-202ENST00000339394 FBXW10Q5XX13 1052 aa19.57■□□□□ 0.72
SDC3-202ENST00000339394 POMGNT2Q8NAT1 580 aa19.57■□□□□ 0.72
SDC3-202ENST00000339394 OR6N1Q8NGY5 312 aa19.57■□□□□ 0.72
SDC3-202ENST00000339394 OR4K13Q8NH42 304 aa19.57■□□□□ 0.72
SDC3-202ENST00000339394 LINC00470Q9BZP3 86 aa19.57■□□□□ 0.72
SDC3-202ENST00000339394 UPB1Q9UBR1 384 aa19.57■□□□□ 0.72
SDC3-202ENST00000339394 MALT1Q9UDY8 824 aa19.57■□□□□ 0.72
SDC3-202ENST00000339394 PCNX1Q96RV3 2341 aa19.57■□□□□ 0.72
SDC3-202ENST00000339394 ALPK2Q86TB3 2170 aa19.57■□□□□ 0.72
SDC3-202ENST00000339394 CENPBD1B2RD01 187 aa19.57■□□□□ 0.72
SDC3-202ENST00000339394 M0R3G1 203 aa19.57■□□□□ 0.72
SDC3-202ENST00000339394 DLGAP1O14490 977 aa19.57■□□□□ 0.72
SDC3-202ENST00000339394 KRT33AO76009 404 aa19.57■□□□□ 0.72
SDC3-202ENST00000339394 CNOT4O95628 575 aaKnown RBP19.57■□□□□ 0.72
SDC3-202ENST00000339394 CDKN2AP42771 156 aaKnown RBP19.57■□□□□ 0.72
SDC3-202ENST00000339394 CLRN1P58418 232 aa19.57■□□□□ 0.72
SDC3-202ENST00000339394 FAPQ12884 760 aa19.57■□□□□ 0.72
SDC3-202ENST00000339394 HIST3H3Q16695 136 aa19.57■□□□□ 0.72
SDC3-202ENST00000339394 ZNF362Q5T0B9 420 aaPredicted RBP19.57■□□□□ 0.72
SDC3-202ENST00000339394 Q6ZT83 130 aa19.57■□□□□ 0.72
SDC3-202ENST00000339394 BEND4Q6ZU67 534 aa19.57■□□□□ 0.72
SDC3-202ENST00000339394 PTCHD4Q6ZW05 846 aa19.57■□□□□ 0.72
SDC3-202ENST00000339394 TMEM54Q969K7 222 aa19.57■□□□□ 0.72
SDC3-202ENST00000339394 ALKBH3Q96Q83 286 aaPredicted RBP19.57■□□□□ 0.72
SDC3-202ENST00000339394 TOR3AQ9H497 397 aa19.57■□□□□ 0.72
SDC3-202ENST00000339394 GLTPQ9NZD2 209 aa19.57■□□□□ 0.72
SDC3-202ENST00000339394 PRSS37A4D1T9 235 aa19.56■□□□□ 0.72
SDC3-202ENST00000339394 FAM90A27PA6NNH2 459 aa19.56■□□□□ 0.72
SDC3-202ENST00000339394 ZAR1LA6NP61 321 aa19.56■□□□□ 0.72
SDC3-202ENST00000339394 H7C1C5 153 aa19.56■□□□□ 0.72
SDC3-202ENST00000339394 PTDSS1P48651 473 aaKnown RBP19.56■□□□□ 0.72
SDC3-202ENST00000339394 LCN6P62502 163 aa19.56■□□□□ 0.72
SDC3-202ENST00000339394 LRFN4Q6PJG9 635 aa19.56■□□□□ 0.72
SDC3-202ENST00000339394 LINGO2Q7L985 606 aa19.56■□□□□ 0.72
SDC3-202ENST00000339394 ADCK1Q86TW2 530 aa19.56■□□□□ 0.72
SDC3-202ENST00000339394 GABRG1Q8N1C3 465 aa19.56■□□□□ 0.72
SDC3-202ENST00000339394 GPR137CQ8N3F9 429 aa19.56■□□□□ 0.72
SDC3-202ENST00000339394 FAM26EQ8N5C1 309 aa19.56■□□□□ 0.72
SDC3-202ENST00000339394 NOXO1Q8NFA2 376 aa19.56■□□□□ 0.72
SDC3-202ENST00000339394 OR52E2Q8NGJ4 325 aa19.56■□□□□ 0.72
SDC3-202ENST00000339394 MBOAT4Q96T53 435 aa19.56■□□□□ 0.72
SDC3-202ENST00000339394 NMNAT3Q96T66 252 aa19.56■□□□□ 0.72
SDC3-202ENST00000339394 GRIP2Q9C0E4 1043 aa19.56■□□□□ 0.72
SDC3-202ENST00000339394 SLC25A19Q9HC21 320 aa19.56■□□□□ 0.72
SDC3-202ENST00000339394 ASB6Q9NWX5 421 aa19.56■□□□□ 0.72
SDC3-202ENST00000339394 SMPD3Q9NY59 655 aaPredicted RBP19.56■□□□□ 0.72
SDC3-202ENST00000339394 ADGRG4Q8IZF6 3080 aa19.56■□□□□ 0.72
SDC3-202ENST00000339394 DIDO1Q9BTC0 2240 aaKnown RBP19.55■□□□□ 0.72
SDC3-202ENST00000339394 INTS1Q8N201 2190 aaKnown RBP19.55■□□□□ 0.72
SDC3-202ENST00000339394 NKX2-6A6NCS4 301 aa19.55■□□□□ 0.72
SDC3-202ENST00000339394 SLC2A10O95528 541 aa19.55■□□□□ 0.72
SDC3-202ENST00000339394 RNF224P0DH78 156 aa19.55■□□□□ 0.72
SDC3-202ENST00000339394 CD47Q08722 323 aa19.55■□□□□ 0.72
SDC3-202ENST00000339394 ALG12Q9BV10 488 aa19.55■□□□□ 0.72
SDC3-202ENST00000339394 CRLF2Q9HC73 371 aa19.55■□□□□ 0.72
SDC3-202ENST00000339394 NCOA6Q14686 2063 aaPredicted RBP19.54■□□□□ 0.72
SDC3-202ENST00000339394 SLC22A23A1A5C7 686 aa19.54■□□□□ 0.72
SDC3-202ENST00000339394 CLEC18AA5D8T8 446 aa19.54■□□□□ 0.72
SDC3-202ENST00000339394 CLDN14O95500 239 aa19.54■□□□□ 0.72
SDC3-202ENST00000339394 QDPRP09417 244 aa19.54■□□□□ 0.72
SDC3-202ENST00000339394 GRK5P34947 590 aa19.54■□□□□ 0.72
SDC3-202ENST00000339394 FOXG1P55316 489 aaPredicted RBP19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms