RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 RGS6P49758 472 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 RAC3P60763 192 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 LCN6P62502 163 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 PLGLB1Q02325 96 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 GALEQ14376 348 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 TMEM225Q6GV28 225 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 C19orf48Q6RUI8 117 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 P2RY8Q86VZ1 359 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 PM20D2Q8IYS1 436 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 KLHL36Q8N4N3 616 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 OR10H4Q8NGA5 316 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 OR2T27Q8NH04 317 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 ADGRG7Q96K78 797 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 SMAD5Q99717 465 aaKnown RBP12.62□□□□□ -0.39
SS18-201ENST00000269137 NUAK2Q9H093 628 aa12.62□□□□□ -0.39
SS18-201ENST00000269137 TSPAN10Q9H1Z9 355 aaPredicted RBP12.62□□□□□ -0.39
SS18-201ENST00000269137 SRA1Q9HD15 236 aaKnown RBP12.62□□□□□ -0.39
SS18-201ENST00000269137 DAPL1A0PJW8 107 aa12.61□□□□□ -0.39
SS18-201ENST00000269137 TNFSF11O14788 317 aa12.61□□□□□ -0.39
SS18-201ENST00000269137 TRAF3IP2O43734 574 aaPredicted RBP12.61□□□□□ -0.39
SS18-201ENST00000269137 MRPL3P09001 348 aaKnown RBP12.61□□□□□ -0.39
SS18-201ENST00000269137 POU3F2P20265 443 aaPredicted RBP12.61□□□□□ -0.39
SS18-201ENST00000269137 RFC3P40938 356 aa12.61□□□□□ -0.39
SS18-201ENST00000269137 BLVRAP53004 296 aa12.61□□□□□ -0.39
SS18-201ENST00000269137 CLDN20P56880 219 aa12.61□□□□□ -0.39
SS18-201ENST00000269137 RUNX1T1Q06455 604 aa12.61□□□□□ -0.39
SS18-201ENST00000269137 ACSM1Q08AH1 577 aa12.61□□□□□ -0.39
SS18-201ENST00000269137 MELKQ14680 651 aa12.61□□□□□ -0.39
SS18-201ENST00000269137 POU4F3Q15319 338 aa12.61□□□□□ -0.39
SS18-201ENST00000269137 CTF1Q16619 201 aa12.61□□□□□ -0.39
SS18-201ENST00000269137 OR2G6Q5TZ20 316 aa12.61□□□□□ -0.39
SS18-201ENST00000269137 TMPRSS11AQ6ZMR5 421 aa12.61□□□□□ -0.39
SS18-201ENST00000269137 HDDC2Q7Z4H3 204 aa12.61□□□□□ -0.39
SS18-201ENST00000269137 SLC22A16Q86VW1 577 aa12.61□□□□□ -0.39
SS18-201ENST00000269137 OR6K6Q8NGW6 343 aa12.61□□□□□ -0.39
SS18-201ENST00000269137 ZHX1-C8orf76Q96EF9 292 aa12.61□□□□□ -0.39
SS18-201ENST00000269137 TXNDC15Q96J42 360 aa12.61□□□□□ -0.39
SS18-201ENST00000269137 KCNK17Q96T54 332 aa12.61□□□□□ -0.39
SS18-201ENST00000269137 ARHGAP9Q9BRR9 750 aa12.61□□□□□ -0.39
SS18-201ENST00000269137 ACKR4Q9NPB9 350 aa12.61□□□□□ -0.39
SS18-201ENST00000269137 KLHL13Q9P2N7 655 aa12.61□□□□□ -0.39
SS18-201ENST00000269137 B9D1Q9UPM9 204 aa12.61□□□□□ -0.39
SS18-201ENST00000269137 FAM166BA8MTA8 275 aa12.6□□□□□ -0.39
SS18-201ENST00000269137 CCRL2O00421 344 aa12.6□□□□□ -0.39
SS18-201ENST00000269137 TFP02787 698 aa12.6□□□□□ -0.39
SS18-201ENST00000269137 CRABP1P29762 137 aa12.6□□□□□ -0.39
SS18-201ENST00000269137 MAGEA5P43359 124 aa12.6□□□□□ -0.39
SS18-201ENST00000269137 CARD18P57730 90 aa12.6□□□□□ -0.39
SS18-201ENST00000269137 PPIAP62937 165 aaKnown RBP12.6□□□□□ -0.39
SS18-201ENST00000269137 ZNF322Q6U7Q0 402 aaPredicted RBP12.6□□□□□ -0.39
SS18-201ENST00000269137 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.6□□□□□ -0.39
SS18-201ENST00000269137 OR2V1Q8NHB1 315 aa12.6□□□□□ -0.39
SS18-201ENST00000269137 TIMP4Q99727 224 aa12.6□□□□□ -0.39
SS18-201ENST00000269137 ALG8Q9BVK2 526 aa12.6□□□□□ -0.39
SS18-201ENST00000269137 MARCH7Q9H992 704 aa12.6□□□□□ -0.39
SS18-201ENST00000269137 MED29Q9NX70 200 aa12.6□□□□□ -0.39
SS18-201ENST00000269137 DKK4Q9UBT3 224 aa12.6□□□□□ -0.39
SS18-201ENST00000269137 DNAJC13O75165 2243 aa12.6□□□□□ -0.39
SS18-201ENST00000269137 KIAA1549Q9HCM3 1950 aa12.6□□□□□ -0.39
SS18-201ENST00000269137 IGLV1-36A0A0B4J1U3 117 aa12.6□□□□□ -0.39
SS18-201ENST00000269137 TRAV17A0A0B4J275 112 aa12.6□□□□□ -0.39
SS18-201ENST00000269137 FAM171A2A8MVW0 826 aa12.6□□□□□ -0.39
SS18-201ENST00000269137 EIF1AYO14602 144 aaKnown RBP12.6□□□□□ -0.39
SS18-201ENST00000269137 RAMP1O60894 148 aa12.6□□□□□ -0.39
SS18-201ENST00000269137 CELA3AP09093 270 aa12.6□□□□□ -0.39
SS18-201ENST00000269137 ZNF43P17038 809 aa12.6□□□□□ -0.39
SS18-201ENST00000269137 KLK2P20151 261 aa12.6□□□□□ -0.39
SS18-201ENST00000269137 CAPZA2P47755 286 aa12.6□□□□□ -0.39
SS18-201ENST00000269137 CD97P48960 835 aa12.6□□□□□ -0.39
SS18-201ENST00000269137 STARP49675 285 aa12.6□□□□□ -0.39
SS18-201ENST00000269137 CLDN15P56746 228 aa12.6□□□□□ -0.39
SS18-201ENST00000269137 ZNF85Q03923 595 aa12.6□□□□□ -0.39
SS18-201ENST00000269137 TPBGQ13641 420 aa12.6□□□□□ -0.39
SS18-201ENST00000269137 SSX1Q16384 188 aa12.6□□□□□ -0.39
SS18-201ENST00000269137 TSTQ16762 297 aaKnown RBP12.6□□□□□ -0.39
SS18-201ENST00000269137 HBMQ6B0K9 141 aa12.6□□□□□ -0.39
SS18-201ENST00000269137 SLC16A9Q7RTY1 509 aa12.6□□□□□ -0.39
SS18-201ENST00000269137 GPAT4Q86UL3 456 aa12.6□□□□□ -0.39
SS18-201ENST00000269137 ATCAYQ86WG3 371 aa12.6□□□□□ -0.39
SS18-201ENST00000269137 SLC35F2Q8IXU6 374 aa12.6□□□□□ -0.39
SS18-201ENST00000269137 TIGD4Q8IY51 512 aa12.6□□□□□ -0.39
SS18-201ENST00000269137 FAM109AQ8N4B1 249 aa12.6□□□□□ -0.39
SS18-201ENST00000269137 ZNF511Q8NB15 262 aa12.6□□□□□ -0.39
SS18-201ENST00000269137 OR6X1Q8NH79 312 aa12.6□□□□□ -0.39
SS18-201ENST00000269137 GATAD2BQ8WXI9 593 aa12.6□□□□□ -0.39
SS18-201ENST00000269137 TM9SF4Q92544 642 aa12.6□□□□□ -0.39
SS18-201ENST00000269137 MRPL13Q9BYD1 178 aaKnown RBP12.6□□□□□ -0.39
SS18-201ENST00000269137 SRXN1Q9BYN0 137 aa12.6□□□□□ -0.39
SS18-201ENST00000269137 ZNF407Q9C0G0 2248 aa12.59□□□□□ -0.39
SS18-201ENST00000269137 A0A1W2PQL4 384 aaPredicted RBP12.59□□□□□ -0.39
SS18-201ENST00000269137 H0YC42 278 aa12.59□□□□□ -0.39
SS18-201ENST00000269137 ACOT7O00154 380 aa12.59□□□□□ -0.39
SS18-201ENST00000269137 SELENOFO60613 162 aa12.59□□□□□ -0.39
SS18-201ENST00000269137 SLC16A7O60669 478 aa12.59□□□□□ -0.39
SS18-201ENST00000269137 ATE1O95260 518 aa12.59□□□□□ -0.39
SS18-201ENST00000269137 CTLA4P16410 223 aa12.59□□□□□ -0.39
SS18-201ENST00000269137 CPEP16870 476 aa12.59□□□□□ -0.39
SS18-201ENST00000269137 CD79BP40259 229 aa12.59□□□□□ -0.39
SS18-201ENST00000269137 NAA10P41227 235 aaPredicted RBP12.59□□□□□ -0.39
SS18-201ENST00000269137 LHX2P50458 406 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms