RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 SRD5A2P31213 254 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 BMXP51813 675 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 ZNF45Q02386 682 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 WIPI1Q5MNZ9 446 aaPredicted RBP10.48□□□□□ -0.73
VPS4A-201ENST00000254950 LINGO2Q7L985 606 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 KIF18BQ86Y91 864 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 MAML2Q8IZL2 1156 aaPredicted RBP10.48□□□□□ -0.73
VPS4A-201ENST00000254950 NEK7Q8TDX7 302 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 C15orf40Q8WUR7 153 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 TSSK2Q96PF2 358 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 AKIRIN1Q9H9L7 192 aaPredicted RBP10.48□□□□□ -0.73
VPS4A-201ENST00000254950 HHLA2Q9UM44 414 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 MEGF11A6BM72 1044 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 METTL21EPA6NDL7 271 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 ITGA5P08648 1049 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 CFL1P23528 166 aaKnown RBP10.48□□□□□ -0.73
VPS4A-201ENST00000254950 CRYBA2P53672 197 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 AP3S2P59780 193 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 LSM11P83369 360 aaKnown RBP eCLIP10.48□□□□□ -0.73
VPS4A-201ENST00000254950 IL10RAQ13651 578 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 GALEQ14376 348 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 NTRK2Q16620 822 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 CNEP1R1Q8N9A8 125 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 MOGAT1Q96PD6 335 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 CALHM2Q9HA72 323 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 MCUBQ9NWR8 336 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 MRPL39Q9NYK5 338 aaKnown RBP10.48□□□□□ -0.73
VPS4A-201ENST00000254950 FTCDNL1E5RQL4 147 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 GDF9O60383 454 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 NTN1O95631 604 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 CCL3P10147 92 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 ABOP16442 354 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 SCRN3Q0VDG4 424 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 PCOLCEQ15113 449 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 MEP1BQ16820 701 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 OR2V1Q8NHB1 315 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 WFDC6Q9BQY6 131 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 B3GNT4Q9C0J1 378 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 MEPEQ9NQ76 525 aaPredicted RBP10.48□□□□□ -0.73
VPS4A-201ENST00000254950 HIF3AQ9Y2N7 669 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 MDC1Q14676 2089 aaKnown RBP10.48□□□□□ -0.73
VPS4A-201ENST00000254950 LCATP04180 440 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 CELA2AP08217 269 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 ADH6P28332 368 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 GLB1L2Q8IW92 636 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 UBASH3BQ8TF42 649 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 ZNF281Q9Y2X9 895 aa10.48□□□□□ -0.73
VPS4A-201ENST00000254950 A0A075B6Q4 140 aa10.47□□□□□ -0.73
VPS4A-201ENST00000254950 LOC102725191A0A1B0GVB3 256 aa10.47□□□□□ -0.73
VPS4A-201ENST00000254950 SLC19A2O60779 497 aa10.47□□□□□ -0.73
VPS4A-201ENST00000254950 MTRF1O75570 445 aaKnown RBP10.47□□□□□ -0.73
VPS4A-201ENST00000254950 CD79AP11912 226 aa10.47□□□□□ -0.73
VPS4A-201ENST00000254950 ZNF12P17014 697 aa10.47□□□□□ -0.73
VPS4A-201ENST00000254950 GP2P55259 537 aaKnown RBP10.47□□□□□ -0.73
VPS4A-201ENST00000254950 TPTEP56180 551 aa10.47□□□□□ -0.73
VPS4A-201ENST00000254950 SPCS2Q15005 226 aa10.47□□□□□ -0.73
VPS4A-201ENST00000254950 PAQR6Q6TCH4 344 aa10.47□□□□□ -0.73
VPS4A-201ENST00000254950 MDGA2Q7Z553 956 aa10.47□□□□□ -0.73
VPS4A-201ENST00000254950 ZFAND2BQ8WV99 257 aa10.47□□□□□ -0.73
VPS4A-201ENST00000254950 GHSRQ92847 366 aa10.47□□□□□ -0.73
VPS4A-201ENST00000254950 S100A16Q96FQ6 103 aaKnown RBP10.47□□□□□ -0.73
VPS4A-201ENST00000254950 NIPAL2Q9H841 368 aa10.47□□□□□ -0.73
VPS4A-201ENST00000254950 RHBDL2Q9NX52 303 aa10.47□□□□□ -0.73
VPS4A-201ENST00000254950 TPRP12270 2363 aaKnown RBP10.47□□□□□ -0.73
VPS4A-201ENST00000254950 GABRPO00591 440 aa10.47□□□□□ -0.73
VPS4A-201ENST00000254950 IL1AP01583 271 aa10.47□□□□□ -0.73
VPS4A-201ENST00000254950 CNR1P21554 472 aa10.47□□□□□ -0.73
VPS4A-201ENST00000254950 CLDN15P56746 228 aa10.47□□□□□ -0.73
VPS4A-201ENST00000254950 RPS25P62851 125 aaKnown RBP10.47□□□□□ -0.73
VPS4A-201ENST00000254950 MALLQ13021 153 aa10.47□□□□□ -0.73
VPS4A-201ENST00000254950 ZNF766Q5HY98 468 aa10.47□□□□□ -0.73
VPS4A-201ENST00000254950 THEM4Q5T1C6 240 aa10.47□□□□□ -0.73
VPS4A-201ENST00000254950 ESPNLQ6ZVH7 1005 aa10.47□□□□□ -0.73
VPS4A-201ENST00000254950 SLC16A14Q7RTX9 510 aa10.47□□□□□ -0.73
VPS4A-201ENST00000254950 LINC00346Q8IVM7 164 aa10.47□□□□□ -0.73
VPS4A-201ENST00000254950 HTRA1Q92743 480 aa10.47□□□□□ -0.73
VPS4A-201ENST00000254950 PRSS27Q9BQR3 290 aa10.47□□□□□ -0.73
VPS4A-201ENST00000254950 EMC9Q9Y3B6 208 aa10.47□□□□□ -0.73
VPS4A-201ENST00000254950 H0YC42 278 aa10.47□□□□□ -0.73
VPS4A-201ENST00000254950 LIPCP11150 499 aa10.47□□□□□ -0.73
VPS4A-201ENST00000254950 SLC2A2P11168 524 aaPredicted RBP10.47□□□□□ -0.73
VPS4A-201ENST00000254950 COX6A1P12074 109 aa10.47□□□□□ -0.73
VPS4A-201ENST00000254950 RAC1P63000 192 aa10.47□□□□□ -0.73
VPS4A-201ENST00000254950 MRPL14Q6P1L8 145 aaKnown RBP10.47□□□□□ -0.73
VPS4A-201ENST00000254950 UNQ6126/PRO20091Q6UXV3 157 aa10.47□□□□□ -0.73
VPS4A-201ENST00000254950 PXKQ7Z7A4 578 aa10.47□□□□□ -0.73
VPS4A-201ENST00000254950 ADGRG3Q86Y34 549 aa10.47□□□□□ -0.73
VPS4A-201ENST00000254950 APCDD1LQ8NCL9 501 aa10.47□□□□□ -0.73
VPS4A-201ENST00000254950 SARAFQ96BY9 339 aa10.47□□□□□ -0.73
VPS4A-201ENST00000254950 EXTL2Q9UBQ6 330 aa10.47□□□□□ -0.73
VPS4A-201ENST00000254950 TNFSF11O14788 317 aa10.46□□□□□ -0.73
VPS4A-201ENST00000254950 CSTBP04080 98 aaKnown RBP10.46□□□□□ -0.73
VPS4A-201ENST00000254950 MAS1P04201 325 aa10.46□□□□□ -0.73
VPS4A-201ENST00000254950 UCHL1P09936 223 aa10.46□□□□□ -0.73
VPS4A-201ENST00000254950 CD97P48960 835 aa10.46□□□□□ -0.73
VPS4A-201ENST00000254950 ZNF770Q6IQ21 691 aaPredicted RBP10.46□□□□□ -0.73
VPS4A-201ENST00000254950 FAM71F1Q96KD3 344 aaPredicted RBP10.46□□□□□ -0.73
VPS4A-201ENST00000254950 GPA33Q99795 319 aa10.46□□□□□ -0.73
VPS4A-201ENST00000254950 A0A1W2PQL4 384 aaPredicted RBP10.46□□□□□ -0.74
VPS4A-201ENST00000254950 OR2M5A3KFT3 312 aa10.46□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms