RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 CLOCKO15516 846 aa11.84□□□□□ -0.51
LINC00540-202ENST00000616974 KLF4O43474 513 aa11.84□□□□□ -0.51
LINC00540-202ENST00000616974 SLC9A3P48764 834 aa11.84□□□□□ -0.51
LINC00540-202ENST00000616974 FMODQ06828 376 aa11.84□□□□□ -0.51
LINC00540-202ENST00000616974 SPOCK1Q08629 439 aa11.84□□□□□ -0.51
LINC00540-202ENST00000616974 GABRA6Q16445 453 aa11.84□□□□□ -0.51
LINC00540-202ENST00000616974 ACKR1Q16570 336 aa11.84□□□□□ -0.51
LINC00540-202ENST00000616974 PIWIL3Q7Z3Z3 882 aaKnown RBP11.84□□□□□ -0.51
LINC00540-202ENST00000616974 PXKQ7Z7A4 578 aa11.84□□□□□ -0.51
LINC00540-202ENST00000616974 MYPOPQ86VE0 399 aaPredicted RBP11.84□□□□□ -0.51
LINC00540-202ENST00000616974 KIF18BQ86Y91 864 aa11.84□□□□□ -0.51
LINC00540-202ENST00000616974 OR4C15Q8NGM1 316 aa11.84□□□□□ -0.51
LINC00540-202ENST00000616974 NEUROG1Q92886 237 aa11.84□□□□□ -0.51
LINC00540-202ENST00000616974 MCUR1Q96AQ8 359 aa11.84□□□□□ -0.51
LINC00540-202ENST00000616974 ALPK1Q96QP1 1244 aa11.84□□□□□ -0.51
LINC00540-202ENST00000616974 CHID1Q9BWS9 393 aa11.84□□□□□ -0.51
LINC00540-202ENST00000616974 SEC61A2Q9H9S3 476 aa11.84□□□□□ -0.51
LINC00540-202ENST00000616974 UPB1Q9UBR1 384 aa11.84□□□□□ -0.51
LINC00540-202ENST00000616974 LOC102725191A0A1B0GVB3 256 aa11.83□□□□□ -0.52
LINC00540-202ENST00000616974 TCRBV3S1A0A5B6 114 aa11.83□□□□□ -0.52
LINC00540-202ENST00000616974 FAM221AA4D161 298 aa11.83□□□□□ -0.52
LINC00540-202ENST00000616974 HRGP04196 525 aa11.83□□□□□ -0.52
LINC00540-202ENST00000616974 ROR2Q01974 943 aaKnown RBP11.83□□□□□ -0.52
LINC00540-202ENST00000616974 CCNIQ14094 377 aa11.83□□□□□ -0.52
LINC00540-202ENST00000616974 LRFN4Q6PJG9 635 aa11.83□□□□□ -0.52
LINC00540-202ENST00000616974 TMEM200AQ86VY9 491 aa11.83□□□□□ -0.52
LINC00540-202ENST00000616974 CYP4Z1Q86W10 505 aa11.83□□□□□ -0.52
LINC00540-202ENST00000616974 WDR31Q8NA23 367 aa11.83□□□□□ -0.52
LINC00540-202ENST00000616974 LIPHQ8WWY8 451 aa11.83□□□□□ -0.52
LINC00540-202ENST00000616974 HS6ST2Q96MM7 605 aa11.83□□□□□ -0.52
LINC00540-202ENST00000616974 FANCFQ9NPI8 374 aa11.83□□□□□ -0.52
LINC00540-202ENST00000616974 KCNN3Q9UGI6 736 aa11.83□□□□□ -0.52
LINC00540-202ENST00000616974 HIF3AQ9Y2N7 669 aa11.83□□□□□ -0.52
LINC00540-202ENST00000616974 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.83□□□□□ -0.52
LINC00540-202ENST00000616974 DHRS12A0PJE2 317 aa11.83□□□□□ -0.52
LINC00540-202ENST00000616974 EFCAB9A8MZ26 197 aa11.83□□□□□ -0.52
LINC00540-202ENST00000616974 IL32P24001 234 aa11.83□□□□□ -0.52
LINC00540-202ENST00000616974 ERVK-25P63136 954 aa11.83□□□□□ -0.52
LINC00540-202ENST00000616974 TRAP1Q12931 704 aaKnown RBP11.83□□□□□ -0.52
LINC00540-202ENST00000616974 MFSD13AQ14CX5 517 aa11.83□□□□□ -0.52
LINC00540-202ENST00000616974 CEACAM16Q2WEN9 425 aa11.83□□□□□ -0.52
LINC00540-202ENST00000616974 OAFQ86UD1 273 aa11.83□□□□□ -0.52
LINC00540-202ENST00000616974 PIK3IP1Q96FE7 263 aa11.83□□□□□ -0.52
LINC00540-202ENST00000616974 LRGUKQ96M69 825 aa11.83□□□□□ -0.52
LINC00540-202ENST00000616974 TSPAN32Q96QS1 320 aa11.83□□□□□ -0.52
LINC00540-202ENST00000616974 NOX3Q9HBY0 568 aa11.83□□□□□ -0.52
LINC00540-202ENST00000616974 SIGLEC7Q9Y286 467 aa11.83□□□□□ -0.52
LINC00540-202ENST00000616974 NOX1Q9Y5S8 564 aa11.83□□□□□ -0.52
LINC00540-202ENST00000616974 MED13LQ71F56 2210 aa11.82□□□□□ -0.52
LINC00540-202ENST00000616974 ANKRD65E5RJM6 399 aa11.82□□□□□ -0.52
LINC00540-202ENST00000616974 OR10H3O60404 316 aa11.82□□□□□ -0.52
LINC00540-202ENST00000616974 OR6A2O95222 327 aa11.82□□□□□ -0.52
LINC00540-202ENST00000616974 SLC2A10O95528 541 aa11.82□□□□□ -0.52
LINC00540-202ENST00000616974 ZP4Q12836 540 aa11.82□□□□□ -0.52
LINC00540-202ENST00000616974 ALG10Q5BKT4 473 aa11.82□□□□□ -0.52
LINC00540-202ENST00000616974 ARMC4Q5T2S8 1044 aa11.82□□□□□ -0.52
LINC00540-202ENST00000616974 ZNF770Q6IQ21 691 aaPredicted RBP11.82□□□□□ -0.52
LINC00540-202ENST00000616974 PGBD2Q6P3X8 592 aa11.82□□□□□ -0.52
LINC00540-202ENST00000616974 TMPRSS11FQ6ZWK6 438 aa11.82□□□□□ -0.52
LINC00540-202ENST00000616974 C20orf196Q8IYI0 205 aa11.82□□□□□ -0.52
LINC00540-202ENST00000616974 FGFBP3Q8TAT2 258 aa11.82□□□□□ -0.52
LINC00540-202ENST00000616974 ASB10Q8WXI3 467 aa11.82□□□□□ -0.52
LINC00540-202ENST00000616974 HDAC2Q92769 488 aaKnown RBP11.82□□□□□ -0.52
LINC00540-202ENST00000616974 RASD2Q96D21 266 aa11.82□□□□□ -0.52
LINC00540-202ENST00000616974 DACH2Q96NX9 599 aa11.82□□□□□ -0.52
LINC00540-202ENST00000616974 FOXN4Q96NZ1 517 aa11.82□□□□□ -0.52
LINC00540-202ENST00000616974 PLA2G12AQ9BZM1 189 aa11.82□□□□□ -0.52
LINC00540-202ENST00000616974 CLEC4MQ9H2X3 399 aaPredicted RBP11.82□□□□□ -0.52
LINC00540-202ENST00000616974 GPR35Q9HC97 309 aa11.82□□□□□ -0.52
LINC00540-202ENST00000616974 RASSF1Q9NS23 344 aa11.82□□□□□ -0.52
LINC00540-202ENST00000616974 PARPBPQ9NWS1 579 aa11.82□□□□□ -0.52
LINC00540-202ENST00000616974 TAS2R16Q9NYV7 291 aa11.82□□□□□ -0.52
LINC00540-202ENST00000616974 CIB4A0PJX0 185 aa11.81□□□□□ -0.52
LINC00540-202ENST00000616974 PTP4A3O75365 173 aa11.81□□□□□ -0.52
LINC00540-202ENST00000616974 TIPRLO75663 272 aa11.81□□□□□ -0.52
LINC00540-202ENST00000616974 GASTP01350 101 aa11.81□□□□□ -0.52
LINC00540-202ENST00000616974 HIST1H2ABP04908 130 aa11.81□□□□□ -0.52
LINC00540-202ENST00000616974 PATE4P0C8F1 98 aa11.81□□□□□ -0.52
LINC00540-202ENST00000616974 PGA4P0DJD7 388 aa11.81□□□□□ -0.52
LINC00540-202ENST00000616974 PGA3P0DJD8 388 aa11.81□□□□□ -0.52
LINC00540-202ENST00000616974 ARF1P84077 181 aaKnown RBP11.81□□□□□ -0.52
LINC00540-202ENST00000616974 CHRNB3Q05901 458 aa11.81□□□□□ -0.52
LINC00540-202ENST00000616974 P2RY6Q15077 328 aa11.81□□□□□ -0.52
LINC00540-202ENST00000616974 HIST3H2AQ7L7L0 130 aa11.81□□□□□ -0.52
LINC00540-202ENST00000616974 HIST1H2ACQ93077 130 aa11.81□□□□□ -0.52
LINC00540-202ENST00000616974 TACO1Q9BSH4 297 aaKnown RBP11.81□□□□□ -0.52
LINC00540-202ENST00000616974 KATNB1Q9BVA0 655 aa11.81□□□□□ -0.52
LINC00540-202ENST00000616974 MUC13Q9H3R2 512 aa11.81□□□□□ -0.52
LINC00540-202ENST00000616974 EGLN3Q9H6Z9 239 aa11.81□□□□□ -0.52
LINC00540-202ENST00000616974 INIPQ9NRY2 104 aa11.81□□□□□ -0.52
LINC00540-202ENST00000616974 ZNF346Q9UL40 294 aaKnown RBP11.81□□□□□ -0.52
LINC00540-202ENST00000616974 RCE1Q9Y256 329 aa11.81□□□□□ -0.52
LINC00540-202ENST00000616974 GPR52Q9Y2T5 361 aa11.81□□□□□ -0.52
LINC00540-202ENST00000616974 OR5H1A6NKK0 313 aa11.81□□□□□ -0.52
LINC00540-202ENST00000616974 TNFRSF11BO00300 401 aa11.81□□□□□ -0.52
LINC00540-202ENST00000616974 CELA3BP08861 270 aa11.81□□□□□ -0.52
LINC00540-202ENST00000616974 RAP2AP10114 183 aa11.81□□□□□ -0.52
LINC00540-202ENST00000616974 B4GALT1P15291 398 aa11.81□□□□□ -0.52
LINC00540-202ENST00000616974 PRKACGP22612 351 aa11.81□□□□□ -0.52
LINC00540-202ENST00000616974 CRYGSP22914 178 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms