RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 PER3P56645 1201 aa12.74□□□□□ -0.37
UPF1-211ENST00000600868 RAP1BP61224 184 aa12.74□□□□□ -0.37
UPF1-211ENST00000600868 RAP1AP62834 184 aa12.74□□□□□ -0.37
UPF1-211ENST00000600868 PMPCAQ10713 525 aa12.74□□□□□ -0.37
UPF1-211ENST00000600868 TOP3AQ13472 1001 aaPredicted RBP12.74□□□□□ -0.37
UPF1-211ENST00000600868 TMEM236Q5W0B7 351 aa12.74□□□□□ -0.37
UPF1-211ENST00000600868 FAM214BQ7L5A3 538 aa12.74□□□□□ -0.37
UPF1-211ENST00000600868 MARVELD2Q8N4S9 558 aa12.74□□□□□ -0.37
UPF1-211ENST00000600868 DHRSXQ8N5I4 330 aa12.74□□□□□ -0.37
UPF1-211ENST00000600868 ARIH2OSQ8N7S6 290 aa12.74□□□□□ -0.37
UPF1-211ENST00000600868 ZNF775Q96BV0 537 aaPredicted RBP12.74□□□□□ -0.37
UPF1-211ENST00000600868 INTS12Q96CB8 462 aaKnown RBP12.74□□□□□ -0.37
UPF1-211ENST00000600868 Q96M85 177 aa12.74□□□□□ -0.37
UPF1-211ENST00000600868 PITX2Q99697 317 aa12.74□□□□□ -0.37
UPF1-211ENST00000600868 MED29Q9NX70 200 aa12.74□□□□□ -0.37
UPF1-211ENST00000600868 NDRG4Q9ULP0 352 aaKnown RBP12.74□□□□□ -0.37
UPF1-211ENST00000600868 NOSIPQ9Y314 301 aaKnown RBP12.74□□□□□ -0.37
UPF1-211ENST00000600868 EMC9Q9Y3B6 208 aa12.74□□□□□ -0.37
UPF1-211ENST00000600868 FAM208BQ5VWN6 2430 aa12.74□□□□□ -0.37
UPF1-211ENST00000600868 CHD6Q8TD26 2715 aa12.74□□□□□ -0.37
UPF1-211ENST00000600868 TEX13CA0A0J9YWL9 993 aa12.73□□□□□ -0.37
UPF1-211ENST00000600868 A0A1B0GUH1 482 aa12.73□□□□□ -0.37
UPF1-211ENST00000600868 LOC100130705A0A1B0GUX0 176 aa12.73□□□□□ -0.37
UPF1-211ENST00000600868 SLC35F4A4IF30 521 aa12.73□□□□□ -0.37
UPF1-211ENST00000600868 HSPB2A8KAH6 182 aa12.73□□□□□ -0.37
UPF1-211ENST00000600868 CENPBD1B2RD01 187 aa12.73□□□□□ -0.37
UPF1-211ENST00000600868 H0YAE9 185 aa12.73□□□□□ -0.37
UPF1-211ENST00000600868 AHCYL1O43865 530 aa12.73□□□□□ -0.37
UPF1-211ENST00000600868 TMIGD3P0DMS9 266 aaPredicted RBP12.73□□□□□ -0.37
UPF1-211ENST00000600868 GNLYP22749 145 aa12.73□□□□□ -0.37
UPF1-211ENST00000600868 NTF4P34130 210 aa12.73□□□□□ -0.37
UPF1-211ENST00000600868 ACVR1BP36896 505 aa12.73□□□□□ -0.37
UPF1-211ENST00000600868 KIR2DL2P43627 348 aaPredicted RBP12.73□□□□□ -0.37
UPF1-211ENST00000600868 HSPA13P48723 471 aa12.73□□□□□ -0.37
UPF1-211ENST00000600868 ADARB1P78563 741 aaKnown RBP12.73□□□□□ -0.37
UPF1-211ENST00000600868 MELKQ14680 651 aa12.73□□□□□ -0.37
UPF1-211ENST00000600868 HSPB2Q16082 182 aa12.73□□□□□ -0.37
UPF1-211ENST00000600868 TTC23Q5W5X9 447 aa12.73□□□□□ -0.37
UPF1-211ENST00000600868 C12orf73Q69YU5 71 aa12.73□□□□□ -0.37
UPF1-211ENST00000600868 IZUMO2Q6UXV1 221 aa12.73□□□□□ -0.37
UPF1-211ENST00000600868 AAED1Q7RTV5 226 aa12.73□□□□□ -0.37
UPF1-211ENST00000600868 ADCK1Q86TW2 530 aa12.73□□□□□ -0.37
UPF1-211ENST00000600868 GCNT2Q8N0V5 402 aa12.73□□□□□ -0.37
UPF1-211ENST00000600868 ZNF555Q8NEP9 628 aa12.73□□□□□ -0.37
UPF1-211ENST00000600868 RASD2Q96D21 266 aa12.73□□□□□ -0.37
UPF1-211ENST00000600868 SLC25A44Q96H78 314 aaPredicted RBP12.73□□□□□ -0.37
UPF1-211ENST00000600868 OR2M2Q96R28 347 aa12.73□□□□□ -0.37
UPF1-211ENST00000600868 SNX18Q96RF0 628 aa12.73□□□□□ -0.37
UPF1-211ENST00000600868 ADI1Q9BV57 179 aa12.73□□□□□ -0.37
UPF1-211ENST00000600868 EMC6Q9BV81 110 aa12.73□□□□□ -0.37
UPF1-211ENST00000600868 MRPL13Q9BYD1 178 aaKnown RBP12.73□□□□□ -0.37
UPF1-211ENST00000600868 PRRG3Q9BZD7 231 aa12.73□□□□□ -0.37
UPF1-211ENST00000600868 KLHL21Q9UJP4 597 aa12.73□□□□□ -0.37
UPF1-211ENST00000600868 RP1L1Q8IWN7 2480 aaPredicted RBP12.73□□□□□ -0.37
UPF1-211ENST00000600868 CCL21O00585 134 aa12.72□□□□□ -0.37
UPF1-211ENST00000600868 XKRYO14609 159 aa12.72□□□□□ -0.37
UPF1-211ENST00000600868 SURF4O15260 269 aa12.72□□□□□ -0.37
UPF1-211ENST00000600868 MRPL33O75394 65 aaKnown RBP12.72□□□□□ -0.37
UPF1-211ENST00000600868 IL18BPO95998 194 aa12.72□□□□□ -0.37
UPF1-211ENST00000600868 IFNGP01579 166 aa12.72□□□□□ -0.37
UPF1-211ENST00000600868 IGHG1P01857 330 aa12.72□□□□□ -0.37
UPF1-211ENST00000600868 ACADSP16219 412 aa12.72□□□□□ -0.37
UPF1-211ENST00000600868 HIST1H1CP16403 213 aaKnown RBP12.72□□□□□ -0.37
UPF1-211ENST00000600868 CTSSP25774 331 aa12.72□□□□□ -0.37
UPF1-211ENST00000600868 GGT2P36268 569 aa12.72□□□□□ -0.37
UPF1-211ENST00000600868 CAPGP40121 348 aa12.72□□□□□ -0.37
UPF1-211ENST00000600868 SELENOPP49908 381 aa12.72□□□□□ -0.37
UPF1-211ENST00000600868 RUNX1T1Q06455 604 aa12.72□□□□□ -0.37
UPF1-211ENST00000600868 FOXF2Q12947 444 aa12.72□□□□□ -0.37
UPF1-211ENST00000600868 KRR1Q13601 381 aaKnown RBP12.72□□□□□ -0.37
UPF1-211ENST00000600868 KEAP1Q14145 624 aa12.72□□□□□ -0.37
UPF1-211ENST00000600868 MESTQ5EB52 335 aa12.72□□□□□ -0.37
UPF1-211ENST00000600868 ZNF362Q5T0B9 420 aaPredicted RBP12.72□□□□□ -0.37
UPF1-211ENST00000600868 NIPAL3Q6P499 406 aa12.72□□□□□ -0.37
UPF1-211ENST00000600868 CASP12Q6UXS9 341 aa12.72□□□□□ -0.37
UPF1-211ENST00000600868 NUFIP2Q7Z417 695 aaKnown RBP12.72□□□□□ -0.37
UPF1-211ENST00000600868 WDFY1Q8IWB7 410 aa12.72□□□□□ -0.37
UPF1-211ENST00000600868 TMEM123Q8N131 208 aa12.72□□□□□ -0.37
UPF1-211ENST00000600868 NAXEQ8NCW5 288 aa12.72□□□□□ -0.37
UPF1-211ENST00000600868 OR6K3Q8NGY3 331 aa12.72□□□□□ -0.37
UPF1-211ENST00000600868 CYGBQ8WWM9 190 aa12.72□□□□□ -0.37
UPF1-211ENST00000600868 TFAP2CQ92754 450 aa12.72□□□□□ -0.37
UPF1-211ENST00000600868 HDAC2Q92769 488 aaKnown RBP12.72□□□□□ -0.37
UPF1-211ENST00000600868 SLC38A2Q96QD8 506 aa12.72□□□□□ -0.37
UPF1-211ENST00000600868 ALG12Q9BV10 488 aa12.72□□□□□ -0.37
UPF1-211ENST00000600868 SFXN3Q9BWM7 321 aa12.72□□□□□ -0.37
UPF1-211ENST00000600868 CMC2Q9NRP2 79 aa12.72□□□□□ -0.37
UPF1-211ENST00000600868 GMPPBQ9Y5P6 360 aa12.72□□□□□ -0.37
UPF1-211ENST00000600868 A0A0G2JNJ9 132 aa12.71□□□□□ -0.37
UPF1-211ENST00000600868 OR6C65A6NJZ3 312 aa12.71□□□□□ -0.37
UPF1-211ENST00000600868 RIIAD1A6NNX1 92 aa12.71□□□□□ -0.37
UPF1-211ENST00000600868 ARHGEF9O43307 516 aa12.71□□□□□ -0.37
UPF1-211ENST00000600868 SLC43A1O75387 559 aa12.71□□□□□ -0.37
UPF1-211ENST00000600868 TRMUO75648 421 aaKnown RBP12.71□□□□□ -0.37
UPF1-211ENST00000600868 TNFSF13O75888 250 aa12.71□□□□□ -0.37
UPF1-211ENST00000600868 PGA4P0DJD7 388 aa12.71□□□□□ -0.37
UPF1-211ENST00000600868 PGA3P0DJD8 388 aa12.71□□□□□ -0.37
UPF1-211ENST00000600868 ZNF3P17036 446 aa12.71□□□□□ -0.37
UPF1-211ENST00000600868 OPRM1P35372 400 aa12.71□□□□□ -0.37
UPF1-211ENST00000600868 CDKN2AP42771 156 aaKnown RBP12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms