RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 ANKRD16Q6P6B7 361 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 PRSS57Q6UWY2 283 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 SEZ6L2Q6UXD5 910 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 HACD2Q6Y1H2 254 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 PXKQ7Z7A4 578 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 FBXL14Q8N1E6 418 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 OR4D11Q8NGI4 311 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 NEUROG1Q92886 237 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 FAM162AQ96A26 154 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 SGTBQ96EQ0 304 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 PRRC1Q96M27 445 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 HS6ST2Q96MM7 605 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 MOGAT1Q96PD6 335 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 DHRS9Q9BPW9 319 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 KCTD14Q9BQ13 255 aaPredicted RBP7.09□□□□□ -1.27
VPS53-214ENST00000572607 BDH2Q9BUT1 245 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 ULBP2Q9BZM5 246 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 CRLF2Q9HC73 371 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 GPR35Q9HC97 309 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 CMTM6Q9NX76 183 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 USP22Q9UPT9 525 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 POFUT2Q9Y2G5 429 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 RTTNQ86VV8 2226 aa7.09□□□□□ -1.27
VPS53-214ENST00000572607 ZANQ9Y493 2812 aa7.09□□□□□ -1.28
VPS53-214ENST00000572607 MPDZO75970 2070 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 A0A096LPE4 126 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 ARPC4-TTLL3A0A0A6YYG9 625 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 A0A1W2PPZ6 126 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 FAM171A2A8MVW0 826 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 SHISA9B4DS77 424 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 MCIDASD6RGH6 385 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 LRRN3E7EW58 273 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 C11orf98E9PRG8 122 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 MS4A18H0YCH9 400 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 SNX3O60493 162 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 SHOX2O60902 331 aaPredicted RBP7.08□□□□□ -1.28
VPS53-214ENST00000572607 ENTPD5O75356 428 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 ZNF432O94892 652 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 HPRP00739 348 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 CRYAAP02489 173 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 IFNW1P05000 195 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 SOD3P08294 240 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 DANCRP0C864 163 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 PAX1P15863 534 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 TNFRSF1BP20333 461 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 CDKN1AP38936 164 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 OR1E2P47887 323 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 CSNK1A1P48729 337 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 FABP6P51161 128 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 CRYBA2P53672 197 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 BIDP55957 195 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 PSME3P61289 254 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 SELENOWP63302 87 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 ARF1P84077 181 aaKnown RBP7.08□□□□□ -1.28
VPS53-214ENST00000572607 LTBQ06643 244 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 LGALS3BPQ08380 585 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 ST3GAL3Q11203 375 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 PIN1Q13526 163 aaPredicted RBP7.08□□□□□ -1.28
VPS53-214ENST00000572607 CAMK2DQ13557 499 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 ETFDHQ16134 617 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 CEACAM16Q2WEN9 425 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 MS4A18Q3C1V0 323 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 IFI44LQ53G44 452 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 ZNF544Q6NX49 715 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 WDR88Q6ZMY6 472 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 FKBP9P1Q75LS8 142 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 HDDC2Q7Z4H3 204 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 CYP4Z1Q86W10 505 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 TREML1Q86YW5 311 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 SLC15A3Q8IY34 581 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 CCDC36Q8IYA8 594 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 C20orf196Q8IYI0 205 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 TMEM123Q8N131 208 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 WDR31Q8NA23 367 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 LILRB1Q8NHL6 650 aaPredicted RBP7.08□□□□□ -1.28
VPS53-214ENST00000572607 MAGEE2Q8TD90 523 aaPredicted RBP7.08□□□□□ -1.28
VPS53-214ENST00000572607 TMEM239Q8WW34 195 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 GEMIN6Q8WXD5 167 aaKnown RBP7.08□□□□□ -1.28
VPS53-214ENST00000572607 BCL2L2Q92843 193 aaPredicted RBP7.08□□□□□ -1.28
VPS53-214ENST00000572607 BOD1Q96IK1 185 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 C18orf12Q96KH6 178 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 LRR1Q96L50 414 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 ADAD1Q96M93 576 aaKnown RBP7.08□□□□□ -1.28
VPS53-214ENST00000572607 Q96MF0 132 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 SLC38A2Q96QD8 506 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 OR2M2Q96R28 347 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 EMC6Q9BV81 110 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 BARX1Q9HBU1 254 aaPredicted RBP7.08□□□□□ -1.28
VPS53-214ENST00000572607 SPAG4Q9NPE6 437 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 ZNF701Q9NV72 531 aaPredicted RBP7.08□□□□□ -1.28
VPS53-214ENST00000572607 MED29Q9NX70 200 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 ADA2Q9NZK5 511 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 RIMS3Q9UJD0 308 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 RPS6KA6Q9UK32 745 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 MED31Q9Y3C7 131 aa7.08□□□□□ -1.28
VPS53-214ENST00000572607 A0A1W2PRG6 482 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 HTR3EA5X5Y0 456 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 VSTM5A8MXK1 200 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 ZNF99A8MXY4 864 aaPredicted RBP7.07□□□□□ -1.28
VPS53-214ENST00000572607 E7EQL1 145 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms