RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 CLDN20P56880 219 aa9.22□□□□□ -0.93
USP3-219ENST00000561326 EMX1Q04741 257 aaPredicted RBP9.22□□□□□ -0.93
USP3-219ENST00000561326 NEDD8Q15843 81 aa9.22□□□□□ -0.93
USP3-219ENST00000561326 INAQ16352 499 aa9.22□□□□□ -0.93
USP3-219ENST00000561326 RNLSQ5VYX0 342 aa9.22□□□□□ -0.93
USP3-219ENST00000561326 GTF2IRD2BQ6EKJ0 949 aa9.22□□□□□ -0.93
USP3-219ENST00000561326 RPUSD3Q6P087 351 aaKnown RBP9.22□□□□□ -0.93
USP3-219ENST00000561326 DNM1P34Q6PK57 102 aa9.22□□□□□ -0.93
USP3-219ENST00000561326 GTF2IRD2Q86UP8 949 aa9.22□□□□□ -0.93
USP3-219ENST00000561326 GGNQ86UU5 652 aa9.22□□□□□ -0.93
USP3-219ENST00000561326 LSRQ86X29 649 aaPredicted RBP9.22□□□□□ -0.93
USP3-219ENST00000561326 OR10D3Q8NH80 312 aa9.22□□□□□ -0.93
USP3-219ENST00000561326 ZNF519Q8TB69 540 aa9.22□□□□□ -0.93
USP3-219ENST00000561326 SNRNP27Q8WVK2 155 aaKnown RBP9.22□□□□□ -0.93
USP3-219ENST00000561326 RORBQ92753 470 aa9.22□□□□□ -0.93
USP3-219ENST00000561326 DDOQ99489 341 aa9.22□□□□□ -0.93
USP3-219ENST00000561326 TUBA1CQ9BQE3 449 aa9.22□□□□□ -0.93
USP3-219ENST00000561326 ARHGAP9Q9BRR9 750 aa9.22□□□□□ -0.93
USP3-219ENST00000561326 SF3B5Q9BWJ5 86 aaKnown RBP9.22□□□□□ -0.93
USP3-219ENST00000561326 CDCA4Q9BXL8 241 aa9.22□□□□□ -0.93
USP3-219ENST00000561326 NMNAT2Q9BZQ4 307 aa9.22□□□□□ -0.93
USP3-219ENST00000561326 SLC6A15Q9H2J7 730 aa9.22□□□□□ -0.93
USP3-219ENST00000561326 MED20Q9H944 212 aa9.22□□□□□ -0.93
USP3-219ENST00000561326 SRA1Q9HD15 236 aaKnown RBP9.22□□□□□ -0.93
USP3-219ENST00000561326 FGF20Q9NP95 211 aaPredicted RBP9.22□□□□□ -0.93
USP3-219ENST00000561326 HAO2Q9NYQ3 351 aa9.22□□□□□ -0.93
USP3-219ENST00000561326 DIMT1Q9UNQ2 313 aaKnown RBP9.22□□□□□ -0.93
USP3-219ENST00000561326 EXOGQ9Y2C4 368 aaKnown RBP9.22□□□□□ -0.93
USP3-219ENST00000561326 EXOSC1Q9Y3B2 195 aaKnown RBP9.22□□□□□ -0.93
USP3-219ENST00000561326 CSAG2Q9Y5P2 127 aa9.22□□□□□ -0.93
USP3-219ENST00000561326 FRYQ5TBA9 3013 aa9.21□□□□□ -0.93
USP3-219ENST00000561326 TMEM8BA6NDV4 472 aa9.21□□□□□ -0.94
USP3-219ENST00000561326 CXCL13O43927 109 aa9.21□□□□□ -0.94
USP3-219ENST00000561326 GLCEO94923 617 aa9.21□□□□□ -0.94
USP3-219ENST00000561326 MT-ND2P03891 347 aa9.21□□□□□ -0.94
USP3-219ENST00000561326 HLA-DOBP13765 273 aa9.21□□□□□ -0.94
USP3-219ENST00000561326 CPN1P15169 458 aa9.21□□□□□ -0.94
USP3-219ENST00000561326 ZNF708P17019 499 aa9.21□□□□□ -0.94
USP3-219ENST00000561326 SPI1P17947 270 aa9.21□□□□□ -0.94
USP3-219ENST00000561326 SLC2A5P22732 501 aa9.21□□□□□ -0.94
USP3-219ENST00000561326 P2RY4P51582 365 aa9.21□□□□□ -0.94
USP3-219ENST00000561326 SUCLG1P53597 346 aaKnown RBP9.21□□□□□ -0.94
USP3-219ENST00000561326 BIDP55957 195 aa9.21□□□□□ -0.94
USP3-219ENST00000561326 CXADRP78310 365 aa9.21□□□□□ -0.94
USP3-219ENST00000561326 SRYQ05066 204 aa9.21□□□□□ -0.94
USP3-219ENST00000561326 PIGFQ07326 219 aa9.21□□□□□ -0.94
USP3-219ENST00000561326 C19orf57Q0VDD7 668 aa9.21□□□□□ -0.94
USP3-219ENST00000561326 POU4F3Q15319 338 aa9.21□□□□□ -0.94
USP3-219ENST00000561326 VASNQ6EMK4 673 aa9.21□□□□□ -0.94
USP3-219ENST00000561326 GPR141Q7Z602 305 aa9.21□□□□□ -0.94
USP3-219ENST00000561326 MED12LQ86YW9 2145 aa9.21□□□□□ -0.94
USP3-219ENST00000561326 ACBD7Q8N6N7 88 aa9.21□□□□□ -0.94
USP3-219ENST00000561326 POMGNT2Q8NAT1 580 aa9.21□□□□□ -0.94
USP3-219ENST00000561326 PROKR2Q8NFJ6 384 aa9.21□□□□□ -0.94
USP3-219ENST00000561326 BBS1Q8NFJ9 593 aa9.21□□□□□ -0.94
USP3-219ENST00000561326 OR52I1Q8NGK6 324 aa9.21□□□□□ -0.94
USP3-219ENST00000561326 OR9Q1Q8NGQ5 310 aa9.21□□□□□ -0.94
USP3-219ENST00000561326 OR6X1Q8NH79 312 aa9.21□□□□□ -0.94
USP3-219ENST00000561326 ASB10Q8WXI3 467 aa9.21□□□□□ -0.94
USP3-219ENST00000561326 SGCDQ92629 289 aa9.21□□□□□ -0.94
USP3-219ENST00000561326 LGALS12Q96DT0 336 aa9.21□□□□□ -0.94
USP3-219ENST00000561326 MRPL48Q96GC5 212 aaKnown RBP9.21□□□□□ -0.94
USP3-219ENST00000561326 ABHD17AQ96GS6 310 aa9.21□□□□□ -0.94
USP3-219ENST00000561326 SLC25A44Q96H78 314 aaPredicted RBP9.21□□□□□ -0.94
USP3-219ENST00000561326 ADGRG7Q96K78 797 aa9.21□□□□□ -0.94
USP3-219ENST00000561326 ALG12Q9BV10 488 aa9.21□□□□□ -0.94
USP3-219ENST00000561326 MFRPQ9BY79 579 aa9.21□□□□□ -0.94
USP3-219ENST00000561326 PRRG4Q9BZD6 226 aa9.21□□□□□ -0.94
USP3-219ENST00000561326 RPRD1BQ9NQG5 326 aaKnown RBP9.21□□□□□ -0.94
USP3-219ENST00000561326 INPP5EQ9NRR6 644 aa9.21□□□□□ -0.94
USP3-219ENST00000561326 ASB6Q9NWX5 421 aa9.21□□□□□ -0.94
USP3-219ENST00000561326 VSX1Q9NZR4 365 aaPredicted RBP9.21□□□□□ -0.94
USP3-219ENST00000561326 MCTS1Q9ULC4 181 aaKnown RBP9.21□□□□□ -0.94
USP3-219ENST00000561326 FKBP7Q9Y680 259 aa9.21□□□□□ -0.94
USP3-219ENST00000561326 COMMD3-BMI1R4GMX3 469 aa9.21□□□□□ -0.94
USP3-219ENST00000561326 SLC22A23A1A5C7 686 aa9.2□□□□□ -0.94
USP3-219ENST00000561326 DPPA5A6NC42 116 aa9.2□□□□□ -0.94
USP3-219ENST00000561326 ZNF99A8MXY4 864 aaPredicted RBP9.2□□□□□ -0.94
USP3-219ENST00000561326 IGHG1P01857 330 aa9.2□□□□□ -0.94
USP3-219ENST00000561326 IGHG3P01860 377 aa9.2□□□□□ -0.94
USP3-219ENST00000561326 HTR1AP08908 422 aa9.2□□□□□ -0.94
USP3-219ENST00000561326 C21orf33P30042 268 aaPredicted RBP9.2□□□□□ -0.94
USP3-219ENST00000561326 ALDH3B2P48448 385 aa9.2□□□□□ -0.94
USP3-219ENST00000561326 CLDN18P56856 261 aa9.2□□□□□ -0.94
USP3-219ENST00000561326 CLRN1P58418 232 aa9.2□□□□□ -0.94
USP3-219ENST00000561326 PMP22Q01453 160 aa9.2□□□□□ -0.94
USP3-219ENST00000561326 RASGEF1BQ0VAM2 473 aa9.2□□□□□ -0.94
USP3-219ENST00000561326 SLC17A1Q14916 467 aa9.2□□□□□ -0.94
USP3-219ENST00000561326 SF3B4Q15427 424 aaKnown RBP eCLIP9.2□□□□□ -0.942e-6■■■■□ 21.4
USP3-219ENST00000561326 TBCEQ15813 527 aaPredicted RBP9.2□□□□□ -0.94
USP3-219ENST00000561326 MESTQ5EB52 335 aa9.2□□□□□ -0.94
USP3-219ENST00000561326 RNFT1Q5M7Z0 435 aa9.2□□□□□ -0.94
USP3-219ENST00000561326 THEM4Q5T1C6 240 aa9.2□□□□□ -0.94
USP3-219ENST00000561326 EEF1A1P5Q5VTE0 462 aa9.2□□□□□ -0.94
USP3-219ENST00000561326 UNQ6494/PRO21346Q6UXR6 183 aa9.2□□□□□ -0.94
USP3-219ENST00000561326 CREB3L2Q70SY1 520 aa9.2□□□□□ -0.94
USP3-219ENST00000561326 TRILQ7L0X0 811 aa9.2□□□□□ -0.94
USP3-219ENST00000561326 FCRLAQ7L513 359 aa9.2□□□□□ -0.94
USP3-219ENST00000561326 PM20D2Q8IYS1 436 aa9.2□□□□□ -0.94
USP3-219ENST00000561326 GHDCQ8N2G8 530 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms