RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 PTPMT1Q8WUK0 201 aaPredicted RBP11.7□□□□□ -0.54
LDLR-207ENST00000558013 MRPL38Q96DV4 380 aaKnown RBP11.7□□□□□ -0.54
LDLR-207ENST00000558013 SORCS2Q96PQ0 1159 aa11.7□□□□□ -0.54
LDLR-207ENST00000558013 NOX3Q9HBY0 568 aa11.7□□□□□ -0.54
LDLR-207ENST00000558013 SOHLH2Q9NX45 425 aa11.7□□□□□ -0.54
LDLR-207ENST00000558013 PPM1BO75688 479 aa11.7□□□□□ -0.54
LDLR-207ENST00000558013 CRYZL1O95825 349 aa11.7□□□□□ -0.54
LDLR-207ENST00000558013 ITPKBP27987 946 aa11.7□□□□□ -0.54
LDLR-207ENST00000558013 GUCA2AQ02747 115 aa11.7□□□□□ -0.54
LDLR-207ENST00000558013 ESCO2Q56NI9 601 aa11.7□□□□□ -0.54
LDLR-207ENST00000558013 HACD4Q5VWC8 232 aa11.7□□□□□ -0.54
LDLR-207ENST00000558013 TMEM184AQ6ZMB5 413 aa11.7□□□□□ -0.54
LDLR-207ENST00000558013 ZNF782Q6ZMW2 699 aaPredicted RBP11.7□□□□□ -0.54
LDLR-207ENST00000558013 TMEM106AQ96A25 262 aa11.7□□□□□ -0.54
LDLR-207ENST00000558013 RBP7Q96R05 134 aa11.7□□□□□ -0.54
LDLR-207ENST00000558013 TPSD1Q9BZJ3 242 aa11.7□□□□□ -0.54
LDLR-207ENST00000558013 GRHPRQ9UBQ7 328 aa11.7□□□□□ -0.54
LDLR-207ENST00000558013 KCNG2Q9UJ96 466 aa11.7□□□□□ -0.54
LDLR-207ENST00000558013 HS3ST3A1Q9Y663 406 aa11.7□□□□□ -0.54
LDLR-207ENST00000558013 GPRIN2O60269 458 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 KRT33AO76009 404 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 SIX6O95475 246 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 ABHD16AO95870 558 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 UBL4AP11441 157 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 PRPS1P60891 318 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 IGLV3-21P80748 117 aaPredicted RBP11.69□□□□□ -0.54
LDLR-207ENST00000558013 ALKBH1Q13686 389 aaKnown RBP11.69□□□□□ -0.54
LDLR-207ENST00000558013 ETFDHQ16134 617 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 CMIPQ8IY22 773 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 ZNF595Q8IYB9 648 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 PRSS35Q8N3Z0 413 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 ZNF563Q8TA94 476 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 FCAMRQ8WWV6 532 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 S100A16Q96FQ6 103 aaKnown RBP11.69□□□□□ -0.54
LDLR-207ENST00000558013 CCDC120Q96HB5 630 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 CDCA3Q99618 268 aaPredicted RBP11.69□□□□□ -0.54
LDLR-207ENST00000558013 COPZ2Q9P299 210 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 KLHL9Q9P2J3 617 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 DHCR7Q9UBM7 475 aaKnown RBP11.69□□□□□ -0.54
LDLR-207ENST00000558013 ZNF69Q9UC07 566 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 MRPS33Q9Y291 106 aaKnown RBP11.69□□□□□ -0.54
LDLR-207ENST00000558013 HIF3AQ9Y2N7 669 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 UNC13CQ8NB66 2214 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 FAM221BA6H8Z2 402 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 GABARAPH6UMI1 98 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 ICOSLGO75144 302 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 KDM4BO94953 1096 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 UTS2O95399 124 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 ALDOBP05062 364 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 ASAH2BP0C7U1 165 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 CD1CP29017 333 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 SDHAP31040 664 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 CENPAP49450 140 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 ANGPT1Q15389 498 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 Q499Y3 187 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 FNDC7Q5VTL7 733 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 WBP2NLQ6ICG8 309 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 LRRN1Q6UXK5 716 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 CHRDL2Q6WN34 429 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 SLC16A9Q7RTY1 509 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 MDGA2Q7Z553 956 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 DND1Q8IYX4 353 aaKnown RBP11.69□□□□□ -0.54
LDLR-207ENST00000558013 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.69□□□□□ -0.54
LDLR-207ENST00000558013 RPS4Y2Q8TD47 263 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 SLC25A36Q96CQ1 311 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 NARFLQ9H6Q4 476 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 B3GNT2Q9NY97 397 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 LAMP5Q9UJQ1 280 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 GTF2A1LQ9UNN4 478 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 CHURC1-FNTBB4DL54 471 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 CTDSPLO15194 276 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 RGS11O94810 467 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 WNT11O96014 354 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 DRD1P21728 446 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 FNTBP49356 437 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 TAS2R20P59543 309 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 PUDPQ08623 228 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 SNTA1Q13424 505 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 CBFBQ13951 182 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 CSRP2Q16527 193 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 C2orf68Q2NKX9 166 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 SLC35D3Q5M8T2 416 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 LRRTM1Q86UE6 522 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 OR51D1Q8NGF3 324 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 HGDQ93099 445 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 OR1F2PQ96R84 312 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 MESP1Q9BRJ9 268 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 UBQLN4Q9NRR5 601 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 TAS2R10Q9NYW0 307 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 GMEB2Q9UKD1 530 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 SLC22A13Q9Y226 551 aa11.69□□□□□ -0.54
LDLR-207ENST00000558013 MUC3AQ02505 3323 aa11.68□□□□□ -0.54
LDLR-207ENST00000558013 WDFY4Q6ZS81 3184 aa11.68□□□□□ -0.54
LDLR-207ENST00000558013 ABCA7Q8IZY2 2146 aa11.68□□□□□ -0.54
LDLR-207ENST00000558013 SDC3O75056 442 aa11.68□□□□□ -0.54
LDLR-207ENST00000558013 SLC37A1P57057 533 aa11.68□□□□□ -0.54
LDLR-207ENST00000558013 DMWDQ09019 674 aa11.68□□□□□ -0.54
LDLR-207ENST00000558013 GRK1Q15835 563 aa11.68□□□□□ -0.54
LDLR-207ENST00000558013 TTLL10Q6ZVT0 673 aa11.68□□□□□ -0.54
LDLR-207ENST00000558013 MARCH3Q86UD3 253 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms