RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 ACTG2P63267 376 aa11.47□□□□□ -0.57
SHMT2-229ENST00000557348 GALEQ14376 348 aa11.47□□□□□ -0.57
SHMT2-229ENST00000557348 PCOLCEQ15113 449 aa11.47□□□□□ -0.57
SHMT2-229ENST00000557348 PON3Q15166 354 aa11.47□□□□□ -0.57
SHMT2-229ENST00000557348 TRAM1Q15629 374 aa11.47□□□□□ -0.57
SHMT2-229ENST00000557348 NTRK2Q16620 822 aa11.47□□□□□ -0.57
SHMT2-229ENST00000557348 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.47□□□□□ -0.57
SHMT2-229ENST00000557348 TCEAL6Q6IPX3 200 aa11.47□□□□□ -0.57
SHMT2-229ENST00000557348 CD200R1LQ6Q8B3 271 aa11.47□□□□□ -0.57
SHMT2-229ENST00000557348 TEX261Q6UWH6 196 aa11.47□□□□□ -0.57
SHMT2-229ENST00000557348 KCTD20Q7Z5Y7 419 aa11.47□□□□□ -0.57
SHMT2-229ENST00000557348 ADGRG3Q86Y34 549 aa11.47□□□□□ -0.57
SHMT2-229ENST00000557348 LRRC17Q8N6Y2 441 aa11.47□□□□□ -0.57
SHMT2-229ENST00000557348 BBS1Q8NFJ9 593 aa11.47□□□□□ -0.57
SHMT2-229ENST00000557348 OR52E2Q8NGJ4 325 aa11.47□□□□□ -0.57
SHMT2-229ENST00000557348 HAVCR2Q8TDQ0 301 aa11.47□□□□□ -0.57
SHMT2-229ENST00000557348 DUSP19Q8WTR2 217 aa11.47□□□□□ -0.57
SHMT2-229ENST00000557348 PTP4A1Q93096 173 aa11.47□□□□□ -0.57
SHMT2-229ENST00000557348 TCEAL3Q969E4 200 aa11.47□□□□□ -0.57
SHMT2-229ENST00000557348 KCTD12Q96CX2 325 aaKnown RBP11.47□□□□□ -0.57
SHMT2-229ENST00000557348 PPA2Q9H2U2 334 aa11.47□□□□□ -0.57
SHMT2-229ENST00000557348 MIXL1Q9H2W2 232 aa11.47□□□□□ -0.57
SHMT2-229ENST00000557348 SMOC1Q9H4F8 434 aa11.47□□□□□ -0.57
SHMT2-229ENST00000557348 RNF167Q9H6Y7 350 aa11.47□□□□□ -0.57
SHMT2-229ENST00000557348 TRIM36Q9NQ86 728 aa11.47□□□□□ -0.57
SHMT2-229ENST00000557348 SNTG1Q9NSN8 517 aa11.47□□□□□ -0.57
SHMT2-229ENST00000557348 TXNL4BQ9NX01 149 aaKnown RBP11.47□□□□□ -0.57
SHMT2-229ENST00000557348 PLEKHB1Q9UF11 243 aaPredicted RBP11.47□□□□□ -0.57
SHMT2-229ENST00000557348 PCDHGA1Q9Y5H4 931 aa11.47□□□□□ -0.57
SHMT2-229ENST00000557348 IER3IP1Q9Y5U9 82 aa11.47□□□□□ -0.57
SHMT2-229ENST00000557348 U3KQ87 197 aa11.47□□□□□ -0.57
SHMT2-229ENST00000557348 SEC16AO15027 2179 aa11.47□□□□□ -0.57
SHMT2-229ENST00000557348 ADAMTS9Q9P2N4 1935 aa11.46□□□□□ -0.57
SHMT2-229ENST00000557348 TMED7-TICAM2A0A0A6YYA0 188 aa11.46□□□□□ -0.57
SHMT2-229ENST00000557348 C7orf66A4D0T2 115 aa11.46□□□□□ -0.57
SHMT2-229ENST00000557348 WWP2O00308 870 aa11.46□□□□□ -0.57
SHMT2-229ENST00000557348 ETV2O00321 342 aaPredicted RBP11.46□□□□□ -0.57
SHMT2-229ENST00000557348 SUSD5O60279 629 aa11.46□□□□□ -0.57
SHMT2-229ENST00000557348 AHSA1O95433 338 aa11.46□□□□□ -0.57
SHMT2-229ENST00000557348 MT-ND5P03915 603 aa11.46□□□□□ -0.57
SHMT2-229ENST00000557348 HLA-DPB1P04440 258 aa11.46□□□□□ -0.57
SHMT2-229ENST00000557348 SBK2P0C263 348 aa11.46□□□□□ -0.57
SHMT2-229ENST00000557348 HIST1H1CP16403 213 aaKnown RBP11.46□□□□□ -0.57
SHMT2-229ENST00000557348 ZNF28P17035 718 aa11.46□□□□□ -0.57
SHMT2-229ENST00000557348 SOX3P41225 446 aa11.46□□□□□ -0.57
SHMT2-229ENST00000557348 SLC16A1P53985 500 aa11.46□□□□□ -0.57
SHMT2-229ENST00000557348 HSF2Q03933 536 aa11.46□□□□□ -0.57
SHMT2-229ENST00000557348 EGR4Q05215 589 aa11.46□□□□□ -0.57
SHMT2-229ENST00000557348 SGCBQ16585 318 aa11.46□□□□□ -0.57
SHMT2-229ENST00000557348 CD276Q5ZPR3 534 aa11.46□□□□□ -0.57
SHMT2-229ENST00000557348 LAMTOR1Q6IAA8 161 aa11.46□□□□□ -0.57
SHMT2-229ENST00000557348 LCN10Q6JVE6 187 aa11.46□□□□□ -0.57
SHMT2-229ENST00000557348 OPN5Q6U736 354 aa11.46□□□□□ -0.57
SHMT2-229ENST00000557348 ZNF322Q6U7Q0 402 aaPredicted RBP11.46□□□□□ -0.57
SHMT2-229ENST00000557348 GLRX5Q86SX6 157 aa11.46□□□□□ -0.57
SHMT2-229ENST00000557348 C9orf62Q8N4C0 152 aa11.46□□□□□ -0.57
SHMT2-229ENST00000557348 ZNF485Q8NCK3 441 aa11.46□□□□□ -0.57
SHMT2-229ENST00000557348 OR4F15Q8NGB8 312 aa11.46□□□□□ -0.57
SHMT2-229ENST00000557348 KISS1RQ969F8 398 aaPredicted RBP11.46□□□□□ -0.57
SHMT2-229ENST00000557348 SPACA9Q96E40 222 aaPredicted RBP11.46□□□□□ -0.57
SHMT2-229ENST00000557348 CNN2Q99439 309 aaKnown RBP11.46□□□□□ -0.57
SHMT2-229ENST00000557348 C7orf50Q9BRJ6 194 aaKnown RBP11.46□□□□□ -0.57
SHMT2-229ENST00000557348 OR51V1Q9H2C8 321 aa11.46□□□□□ -0.57
SHMT2-229ENST00000557348 METTL7AQ9H8H3 244 aa11.46□□□□□ -0.57
SHMT2-229ENST00000557348 TMEM9BQ9NQ34 198 aa11.46□□□□□ -0.57
SHMT2-229ENST00000557348 ASB6Q9NWX5 421 aa11.46□□□□□ -0.57
SHMT2-229ENST00000557348 KLRF1Q9NZS2 232 aa11.46□□□□□ -0.57
SHMT2-229ENST00000557348 PPP4R1LQ9P1A2 415 aa11.46□□□□□ -0.57
SHMT2-229ENST00000557348 PADI1Q9ULC6 663 aa11.46□□□□□ -0.57
SHMT2-229ENST00000557348 TMED7Q9Y3B3 224 aa11.46□□□□□ -0.57
SHMT2-229ENST00000557348 HSPB11Q9Y547 144 aa11.46□□□□□ -0.57
SHMT2-229ENST00000557348 FER1L5A0AVI2 2057 aa11.46□□□□□ -0.58
SHMT2-229ENST00000557348 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.46□□□□□ -0.58
SHMT2-229ENST00000557348 A0A0B4J293 547 aa11.46□□□□□ -0.58
SHMT2-229ENST00000557348 TRDV1A0A1B0GX56 115 aa11.46□□□□□ -0.58
SHMT2-229ENST00000557348 TMEM200CA6NKL6 621 aa11.46□□□□□ -0.58
SHMT2-229ENST00000557348 INMT-MINDY4F8WBC2 141 aa11.46□□□□□ -0.58
SHMT2-229ENST00000557348 BLOC1S5-TXNDC5H3BN57 136 aa11.46□□□□□ -0.58
SHMT2-229ENST00000557348 ZNF208O43345 1280 aa11.46□□□□□ -0.58
SHMT2-229ENST00000557348 NPIPB7O75200 414 aa11.46□□□□□ -0.58
SHMT2-229ENST00000557348 SERPINI2O75830 405 aa11.46□□□□□ -0.58
SHMT2-229ENST00000557348 KLF7O75840 302 aaPredicted RBP11.46□□□□□ -0.58
SHMT2-229ENST00000557348 CDRT1O95170 752 aa11.46□□□□□ -0.58
SHMT2-229ENST00000557348 BGLAPP02818 100 aa11.46□□□□□ -0.58
SHMT2-229ENST00000557348 OR2T7P0C7T2 308 aa11.46□□□□□ -0.58
SHMT2-229ENST00000557348 CD59P13987 128 aa11.46□□□□□ -0.58
SHMT2-229ENST00000557348 INPP1P49441 399 aa11.46□□□□□ -0.58
SHMT2-229ENST00000557348 EVX1P49640 407 aa11.46□□□□□ -0.58
SHMT2-229ENST00000557348 FBXW4P57775 412 aa11.46□□□□□ -0.58
SHMT2-229ENST00000557348 RAB14P61106 215 aa11.46□□□□□ -0.58
SHMT2-229ENST00000557348 SOWAHCQ53LP3 525 aaPredicted RBP11.46□□□□□ -0.58
SHMT2-229ENST00000557348 TMEM164Q5U3C3 297 aa11.46□□□□□ -0.58
SHMT2-229ENST00000557348 LIPKQ5VXJ0 399 aa11.46□□□□□ -0.58
SHMT2-229ENST00000557348 C6orf15Q6UXA7 325 aaPredicted RBP11.46□□□□□ -0.58
SHMT2-229ENST00000557348 NDUFAF7Q7L592 441 aa11.46□□□□□ -0.58
SHMT2-229ENST00000557348 LUZP2Q86TE4 346 aa11.46□□□□□ -0.58
SHMT2-229ENST00000557348 Q8N402 240 aa11.46□□□□□ -0.58
SHMT2-229ENST00000557348 SIRT6Q8N6T7 355 aa11.46□□□□□ -0.58
SHMT2-229ENST00000557348 OR2T27Q8NH04 317 aa11.46□□□□□ -0.58
SHMT2-229ENST00000557348 ATOH1Q92858 354 aaPredicted RBP11.46□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms