RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 ACTRT3Q9BYD9 372 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 POFUT1Q9H488 388 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 MYEF2Q9P2K5 600 aaKnown RBP4.43□□□□□ -1.7
LIMA1-214ENST00000552783 ICAM5Q9UMF0 924 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 IER3IP1Q9Y5U9 82 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 V9GY05 133 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 COL4A6Q14031 1691 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 DISC1C4P0D8 188 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 ZNF749O43361 778 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 VEGFDO43915 354 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 ALOX12BO75342 701 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 STX11O75558 287 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 GLSO94925 669 aaPredicted RBP4.42□□□□□ -1.7
LIMA1-214ENST00000552783 FGF19O95750 216 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 ECDO95905 644 aaPredicted RBP4.42□□□□□ -1.7
LIMA1-214ENST00000552783 OR8G3PP0DMU2 310 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 APEHP13798 732 aaKnown RBP4.42□□□□□ -1.7
LIMA1-214ENST00000552783 RPA2P15927 270 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 DDX6P26196 483 aaKnown RBP eCLIP4.42□□□□□ -1.7
LIMA1-214ENST00000552783 CMPK1P30085 196 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 TLX1P31314 330 aaPredicted RBP4.42□□□□□ -1.7
LIMA1-214ENST00000552783 RPL4P36578 427 aaKnown RBP4.42□□□□□ -1.7
LIMA1-214ENST00000552783 CENPAP49450 140 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 RAB28P51157 221 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 TAS2R43P59537 309 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 TGIF1Q15583 401 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 TRAM1Q15629 374 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 CST6Q15828 149 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 LRRTM1Q86UE6 522 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 TMPRSS12Q86WS5 348 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 SLC35F2Q8IXU6 374 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 DND1Q8IYX4 353 aaKnown RBP4.42□□□□□ -1.7
LIMA1-214ENST00000552783 NRSN1Q8IZ57 195 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 OR51D1Q8NGF3 324 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 OR56A1Q8NGH5 318 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 RASD2Q96D21 266 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 C10orf90Q96M02 699 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 TSNAXQ99598 290 aaKnown RBP4.42□□□□□ -1.7
LIMA1-214ENST00000552783 SPSB2Q99619 263 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 MTIF3Q9H2K0 278 aaKnown RBP4.42□□□□□ -1.7
LIMA1-214ENST00000552783 DPEP2Q9H4A9 486 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 PELI2Q9HAT8 420 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 GPN1Q9HCN4 374 aaPredicted RBP4.42□□□□□ -1.7
LIMA1-214ENST00000552783 ASF1BQ9NVP2 202 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 STEAP1Q9UHE8 339 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 RTTNQ86VV8 2226 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 FAM186AA6NE01 2351 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 LOC100509620A0A075B734 347 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 GXYLT2A0PJZ3 443 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 TSPAN11A1L157 253 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 TMEM218A2RU14 115 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 PRSS44E7EML9 344 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 ACOT7O00154 380 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 DCTN6O00399 190 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 PRKNO60260 465 aaPredicted RBP4.42□□□□□ -1.7
LIMA1-214ENST00000552783 CTNSO60931 367 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 LDB3O75112 727 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 AQP8O94778 261 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 SERPINA3P01011 423 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 APODP05090 189 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 GTF2F2P13984 249 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 PVRP15151 417 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 ZNF3P17036 446 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 PEBP1P30086 187 aaKnown RBP4.42□□□□□ -1.7
LIMA1-214ENST00000552783 AKR1C3P42330 323 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 PNLIPRP2P54317 469 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 ATP1B3P54709 279 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 STX4Q12846 297 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 GPM6BQ13491 265 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 FAM53BQ14153 422 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 ZIC1Q15915 447 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 NKAIN2Q5VXU1 208 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 DNM1P46Q6ZS02 220 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 TMPPEQ6ZT21 453 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 TMPRSS11FQ6ZWK6 438 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 RTN4RL2Q86UN3 420 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 GALNT16Q8N428 558 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 FRMD1Q8N878 549 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 COX18Q8N8Q8 333 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 BHLHE23Q8NDY6 225 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 OR52E1Q8NGJ3 308 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 OR1J2Q8NGS2 313 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 SPPL3Q8TCT6 385 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 RXFP4Q8TDU9 374 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 MIB2Q96AX9 1013 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 C3orf49Q96BT1 292 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 CRB3Q9BUF7 120 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 TINAGL1Q9GZM7 467 aaPredicted RBP4.42□□□□□ -1.7
LIMA1-214ENST00000552783 PCBD2Q9H0N5 130 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 EPHX3Q9H6B9 360 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 MTHFD2LQ9H903 347 aaPredicted RBP4.42□□□□□ -1.7
LIMA1-214ENST00000552783 INPP5EQ9NRR6 644 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 FRRS1LQ9P0K9 344 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 SLC27A6Q9Y2P4 619 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 KCNK7Q9Y2U2 307 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 FAM96BQ9Y3D0 163 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 TRANK1O15050 2925 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 A0A1W2PPE3 182 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 NAP1L6A6NFF2 107 aa4.42□□□□□ -1.7
LIMA1-214ENST00000552783 OR5H14A6NHG9 310 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms