RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 FZD4Q9ULV1 537 aa8.16□□□□□ -1.1
VPS13D-212ENST00000543766 CLEC3AO75596 197 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 EPHX1P07099 455 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 AGXTP21549 392 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 DPP4P27487 766 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 GNRHRP30968 328 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 FRKP42685 505 aaPredicted RBP8.15□□□□□ -1.1
VPS13D-212ENST00000543766 RFX2P48378 723 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 BCAT1P54687 386 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 GINS1Q14691 196 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 TNXAQ16473 311 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 ACKR1Q16570 336 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 SMN1Q16637 294 aaKnown RBP8.15□□□□□ -1.1
VPS13D-212ENST00000543766 CST9Q5W186 159 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 TBPL2Q6SJ96 375 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 SIGLEC15Q6ZMC9 328 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 GJD3Q8N144 294 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 DTWD2Q8NBA8 298 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 LGALS12Q96DT0 336 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 MYOCQ99972 504 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 CDCA4Q9BXL8 241 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 CALHM2Q9HA72 323 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 EML4Q9HC35 981 aaKnown RBP8.15□□□□□ -1.1
VPS13D-212ENST00000543766 CALML5Q9NZT1 146 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 ADAM29Q9UKF5 820 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 PAPPA2Q9BXP8 1791 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 K7EP13 123 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 UPK1AO00322 258 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 MANBAO00462 879 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 CDC14BO60729 498 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 SLC19A2O60779 497 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 MPC2O95563 127 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 HIST1H2AGP0C0S8 130 aaPredicted RBP8.15□□□□□ -1.1
VPS13D-212ENST00000543766 HIST1H2ADP20671 130 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 TGFBR1P36897 503 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 CFHR2P36980 270 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 RPL7AP62424 266 aaKnown RBP8.15□□□□□ -1.1
VPS13D-212ENST00000543766 NKX6-1P78426 367 aaPredicted RBP8.15□□□□□ -1.1
VPS13D-212ENST00000543766 PYDC2Q56P42 97 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 TMEM198Q66K66 360 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 HIST2H2AA3Q6FI13 130 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 GTF2H5Q6ZYL4 71 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 KCTD1Q719H9 257 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 SDR9C7Q8NEX9 313 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 OR9Q2Q8NGE9 314 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 OR10R2Q8NGX6 335 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 STT3BQ8TCJ2 826 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 RPL3LQ92901 407 aaKnown RBP8.15□□□□□ -1.1
VPS13D-212ENST00000543766 CXorf40BQ96DE9 158 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 HIST1H2AHQ96KK5 128 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 HIST1H2AJQ99878 128 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 LXNQ9BS40 222 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 HS3ST3A1Q9Y663 406 aa8.15□□□□□ -1.1
VPS13D-212ENST00000543766 SNRNP200O75643 2136 aaKnown RBP8.15□□□□□ -1.11
VPS13D-212ENST00000543766 TBC1D3BA6NDS4 549 aa8.15□□□□□ -1.11
VPS13D-212ENST00000543766 HPP00738 406 aa8.15□□□□□ -1.11
VPS13D-212ENST00000543766 HPRP00739 348 aa8.15□□□□□ -1.11
VPS13D-212ENST00000543766 CDKN2DP55273 166 aa8.15□□□□□ -1.11
VPS13D-212ENST00000543766 CLDN12P56749 244 aa8.15□□□□□ -1.11
VPS13D-212ENST00000543766 CSNK1G2P78368 415 aa8.15□□□□□ -1.11
VPS13D-212ENST00000543766 SLC17A1Q14916 467 aa8.15□□□□□ -1.11
VPS13D-212ENST00000543766 ZNF57Q68EA5 555 aaPredicted RBP8.15□□□□□ -1.11
VPS13D-212ENST00000543766 TBC1D3GQ6DHY5 549 aa8.15□□□□□ -1.11
VPS13D-212ENST00000543766 ZNF770Q6IQ21 691 aaPredicted RBP8.15□□□□□ -1.11
VPS13D-212ENST00000543766 FAM131AQ6UXB0 335 aa8.15□□□□□ -1.11
VPS13D-212ENST00000543766 C15orf39Q6ZRI6 1047 aa8.15□□□□□ -1.11
VPS13D-212ENST00000543766 COX15Q7KZN9 410 aa8.15□□□□□ -1.11
VPS13D-212ENST00000543766 RASGEF1AQ8N9B8 481 aa8.15□□□□□ -1.11
VPS13D-212ENST00000543766 SIDT2Q8NBJ9 832 aaKnown RBP8.15□□□□□ -1.11
VPS13D-212ENST00000543766 OR51A7Q8NH64 312 aa8.15□□□□□ -1.11
VPS13D-212ENST00000543766 ASB13Q8WXK3 278 aa8.15□□□□□ -1.11
VPS13D-212ENST00000543766 SMARCD1Q96GM5 515 aa8.15□□□□□ -1.11
VPS13D-212ENST00000543766 HHIPL1Q96JK4 782 aa8.15□□□□□ -1.11
VPS13D-212ENST00000543766 ZNF75AQ96N20 296 aa8.15□□□□□ -1.11
VPS13D-212ENST00000543766 MCRIP2Q9BUT9 160 aaKnown RBP8.15□□□□□ -1.11
VPS13D-212ENST00000543766 REG4Q9BYZ8 158 aa8.15□□□□□ -1.11
VPS13D-212ENST00000543766 IL22Q9GZX6 179 aa8.15□□□□□ -1.11
VPS13D-212ENST00000543766 SMCO4Q9NRQ5 59 aa8.15□□□□□ -1.11
VPS13D-212ENST00000543766 SIP14410 1827 aa8.15□□□□□ -1.11
VPS13D-212ENST00000543766 UBE2QL1A1L167 161 aa8.14□□□□□ -1.11
VPS13D-212ENST00000543766 ZNF705FA8MVS1 300 aaPredicted RBP8.14□□□□□ -1.11
VPS13D-212ENST00000543766 GRXCR1A8MXD5 290 aa8.14□□□□□ -1.11
VPS13D-212ENST00000543766 ZNF99A8MXY4 864 aaPredicted RBP8.14□□□□□ -1.11
VPS13D-212ENST00000543766 ZNF705DP0CH99 300 aaPredicted RBP8.14□□□□□ -1.11
VPS13D-212ENST00000543766 ZNF705BP0CI00 300 aaPredicted RBP8.14□□□□□ -1.11
VPS13D-212ENST00000543766 LAMP2P13473 410 aa8.14□□□□□ -1.11
VPS13D-212ENST00000543766 GABRA1P14867 456 aa8.14□□□□□ -1.11
VPS13D-212ENST00000543766 GLP1RP43220 463 aa8.14□□□□□ -1.11
VPS13D-212ENST00000543766 PSEN2P49810 448 aa8.14□□□□□ -1.11
VPS13D-212ENST00000543766 HSF1Q00613 529 aa8.14□□□□□ -1.11
VPS13D-212ENST00000543766 IL10RAQ13651 578 aa8.14□□□□□ -1.11
VPS13D-212ENST00000543766 GPR18Q14330 331 aa8.14□□□□□ -1.11
VPS13D-212ENST00000543766 CTU2Q2VPK5 515 aaKnown RBP8.14□□□□□ -1.11
VPS13D-212ENST00000543766 PRR31Q5SQ13 230 aa8.14□□□□□ -1.11
VPS13D-212ENST00000543766 OTUD3Q5T2D3 398 aaPredicted RBP8.14□□□□□ -1.11
VPS13D-212ENST00000543766 HIST2H3PS2Q5TEC6 136 aa8.14□□□□□ -1.11
VPS13D-212ENST00000543766 KDM4DQ6B0I6 523 aa8.14□□□□□ -1.11
VPS13D-212ENST00000543766 TANGO2Q6ICL3 276 aa8.14□□□□□ -1.11
VPS13D-212ENST00000543766 ZNF440Q8IYI8 595 aa8.14□□□□□ -1.11
VPS13D-212ENST00000543766 ZNF664Q8N3J9 261 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms