RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 SHFQ7M4L6 423 aa18.81■□□□□ 0.6
VPS28-208ENST00000527797 OR4F15Q8NGB8 312 aa18.81■□□□□ 0.6
VPS28-208ENST00000527797 OR2T4Q8NH00 348 aa18.81■□□□□ 0.6
VPS28-208ENST00000527797 ASB10Q8WXI3 467 aa18.81■□□□□ 0.6
VPS28-208ENST00000527797 ADGRG7Q96K78 797 aa18.81■□□□□ 0.6
VPS28-208ENST00000527797 MOKQ9UQ07 419 aa18.81■□□□□ 0.6
VPS28-208ENST00000527797 EXOSC1Q9Y3B2 195 aaKnown RBP18.81■□□□□ 0.6
VPS28-208ENST00000527797 PRSS37A4D1T9 235 aa18.8■□□□□ 0.6
VPS28-208ENST00000527797 VAMP5O95183 116 aa18.8■□□□□ 0.6
VPS28-208ENST00000527797 ZNF43P17038 809 aa18.8■□□□□ 0.6
VPS28-208ENST00000527797 ASB18Q6ZVZ8 466 aa18.8■□□□□ 0.6
VPS28-208ENST00000527797 EXD3Q8N9H8 876 aa18.8■□□□□ 0.6
VPS28-208ENST00000527797 OR51L1Q8NGJ5 315 aa18.8■□□□□ 0.6
VPS28-208ENST00000527797 OR13F1Q8NGS4 319 aa18.8■□□□□ 0.6
VPS28-208ENST00000527797 TXNDC15Q96J42 360 aa18.8■□□□□ 0.6
VPS28-208ENST00000527797 MFRPQ9BY79 579 aa18.8■□□□□ 0.6
VPS28-208ENST00000527797 SRXN1Q9BYN0 137 aa18.8■□□□□ 0.6
VPS28-208ENST00000527797 SYT4Q9H2B2 425 aa18.8■□□□□ 0.6
VPS28-208ENST00000527797 SRA1Q9HD15 236 aaKnown RBP18.8■□□□□ 0.6
VPS28-208ENST00000527797 TIGARQ9NQ88 270 aa18.8■□□□□ 0.6
VPS28-208ENST00000527797 MED29Q9NX70 200 aa18.8■□□□□ 0.6
VPS28-208ENST00000527797 VSX1Q9NZR4 365 aaPredicted RBP18.8■□□□□ 0.6
VPS28-208ENST00000527797 MKRN2OSH3BPM6 223 aa18.79■□□□□ 0.6
VPS28-208ENST00000527797 SEC14L2O76054 403 aa18.79■□□□□ 0.6
VPS28-208ENST00000527797 GLCEO94923 617 aa18.79■□□□□ 0.6
VPS28-208ENST00000527797 PTHP01270 115 aa18.79■□□□□ 0.6
VPS28-208ENST00000527797 LCKP06239 509 aa18.79■□□□□ 0.6
VPS28-208ENST00000527797 ENPP1P22413 925 aa18.79■□□□□ 0.6
VPS28-208ENST00000527797 LHX2P50458 406 aa18.79■□□□□ 0.6
VPS28-208ENST00000527797 RNFT1Q5M7Z0 435 aa18.79■□□□□ 0.6
VPS28-208ENST00000527797 SYT6Q5T7P8 510 aaPredicted RBP18.79■□□□□ 0.6
VPS28-208ENST00000527797 NHLRC1Q6VVB1 395 aa18.79■□□□□ 0.6
VPS28-208ENST00000527797 PM20D2Q8IYS1 436 aa18.79■□□□□ 0.6
VPS28-208ENST00000527797 OR10D3Q8NH80 312 aa18.79■□□□□ 0.6
VPS28-208ENST00000527797 ABTB1Q969K4 478 aaPredicted RBP18.79■□□□□ 0.6
VPS28-208ENST00000527797 ZMYND19Q96E35 227 aaPredicted RBP18.79■□□□□ 0.6
VPS28-208ENST00000527797 DEFB127Q9H1M4 99 aa18.79■□□□□ 0.6
VPS28-208ENST00000527797 LDAHQ9H6V9 325 aa18.79■□□□□ 0.6
VPS28-208ENST00000527797 MYL12BO14950 172 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 CXCL13O43927 109 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 RAMP1O60894 148 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 KLK2P20151 261 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 PSMB9P28065 219 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 EIF1AXP47813 144 aaKnown RBP18.78■□□□□ 0.6
VPS28-208ENST00000527797 UCNP55089 124 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 GP2P55259 537 aaKnown RBP18.78■□□□□ 0.6
VPS28-208ENST00000527797 BIDP55957 195 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 GGTLC2Q14390 218 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 TRILQ7L0X0 811 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 HDDC2Q7Z4H3 204 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 NANOGP1Q8N7R0 232 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 PROKR2Q8NFJ6 384 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 TSSK2Q96PF2 358 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 ALG12Q9BV10 488 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 MND1Q9BWT6 205 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 JAM3Q9BX67 310 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 EXO5Q9H790 373 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 ZDHHC11Q9H8X9 412 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 ADGRL4Q9HBW9 690 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 CLEC2DQ9UHP7 191 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 PCDHGB7Q9Y5F8 929 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 IGHV3-15A0A0B4J1V0 119 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 SLC22A23A1A5C7 686 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 H3BSA7 217 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 TRAF3IP2O43734 574 aaPredicted RBP18.78■□□□□ 0.6
VPS28-208ENST00000527797 ACTL6AO96019 429 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 IGHA1P01876 353 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 MRPL3P09001 348 aaKnown RBP18.78■□□□□ 0.6
VPS28-208ENST00000527797 SBK2P0C263 348 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 PYCR1P32322 319 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 ETV1P50549 477 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 GTF2A1P52655 376 aaPredicted RBP18.78■□□□□ 0.6
VPS28-208ENST00000527797 CLDN15P56746 228 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 PMP22Q01453 160 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 RUNX1T1Q06455 604 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 ZNF169Q14929 603 aaPredicted RBP18.78■□□□□ 0.6
VPS28-208ENST00000527797 BCL2A1Q16548 175 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 EEF1A1P5Q5VTE0 462 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 FOXB2Q5VYV0 432 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 ZNF367Q7RTV3 350 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 OR6V1Q8N148 313 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 MEIOBQ8N635 442 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 POMGNT2Q8NAT1 580 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 OR6K6Q8NGW6 343 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 NEIL3Q8TAT5 605 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 ZNRF4Q8WWF5 429 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 UCN2Q96RP3 112 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 NUAK2Q9H093 628 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 FKBP7Q9Y680 259 aa18.78■□□□□ 0.6
VPS28-208ENST00000527797 TRGV5A0A0B4J1U4 118 aa18.77■□□□□ 0.6
VPS28-208ENST00000527797 CCDC160A6NGH7 325 aa18.77■□□□□ 0.6
VPS28-208ENST00000527797 FAM171A2A8MVW0 826 aa18.77■□□□□ 0.6
VPS28-208ENST00000527797 J3QRE1 110 aa18.77■□□□□ 0.6
VPS28-208ENST00000527797 TFECO14948 347 aaPredicted RBP18.77■□□□□ 0.6
VPS28-208ENST00000527797 ITGB2P05107 769 aa18.77■□□□□ 0.6
VPS28-208ENST00000527797 ZNF708P17019 499 aa18.77■□□□□ 0.6
VPS28-208ENST00000527797 ZNF24P17028 368 aa18.77■□□□□ 0.6
VPS28-208ENST00000527797 CLDN18P56856 261 aa18.77■□□□□ 0.6
VPS28-208ENST00000527797 TMPRSS3P57727 454 aa18.77■□□□□ 0.6
VPS28-208ENST00000527797 POU4F3Q15319 338 aa18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms