RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 MIB2Q96AX9 1013 aa19.27■□□□□ 0.68
VPS28-205ENST00000526204 DACT3Q96B18 629 aaPredicted RBP19.27■□□□□ 0.68
VPS28-205ENST00000526204 HAVCR1Q96D42 359 aa19.27■□□□□ 0.68
VPS28-205ENST00000526204 IKZF2Q9UKS7 526 aa19.27■□□□□ 0.68
VPS28-205ENST00000526204 FOXJ3Q9UPW0 622 aa19.27■□□□□ 0.68
VPS28-205ENST00000526204 MEIKINA0A087WXM9 373 aa19.27■□□□□ 0.67
VPS28-205ENST00000526204 A0A1W2PR77 199 aa19.27■□□□□ 0.67
VPS28-205ENST00000526204 TMEM212A6NML5 194 aa19.27■□□□□ 0.67
VPS28-205ENST00000526204 KHNYNO15037 678 aaKnown RBP19.27■□□□□ 0.67
VPS28-205ENST00000526204 ICOSLGO75144 302 aa19.27■□□□□ 0.67
VPS28-205ENST00000526204 DDAH2O95865 285 aa19.27■□□□□ 0.67
VPS28-205ENST00000526204 ALOX5APP20292 161 aa19.27■□□□□ 0.67
VPS28-205ENST00000526204 PSMB1P20618 241 aaKnown RBP19.27■□□□□ 0.67
VPS28-205ENST00000526204 CXCR1P25024 350 aa19.27■□□□□ 0.67
VPS28-205ENST00000526204 MAOBP27338 520 aa19.27■□□□□ 0.67
VPS28-205ENST00000526204 IL12BP29460 328 aa19.27■□□□□ 0.67
VPS28-205ENST00000526204 PTH2RP49190 550 aa19.27■□□□□ 0.67
VPS28-205ENST00000526204 SCAND1P57086 179 aa19.27■□□□□ 0.67
VPS28-205ENST00000526204 ZNF117Q03924 483 aa19.27■□□□□ 0.67
VPS28-205ENST00000526204 TMEM69Q5SWH9 247 aa19.27■□□□□ 0.67
VPS28-205ENST00000526204 OR6N2Q8NGY6 317 aa19.27■□□□□ 0.67
VPS28-205ENST00000526204 C1orf216Q8TAB5 229 aa19.27■□□□□ 0.67
VPS28-205ENST00000526204 CCDC74AQ96AQ1 378 aa19.27■□□□□ 0.67
VPS28-205ENST00000526204 INTS14Q96SY0 518 aa19.27■□□□□ 0.67
VPS28-205ENST00000526204 DIABLOQ9NR28 239 aa19.27■□□□□ 0.67
VPS28-205ENST00000526204 ARPC4-TTLL3A0A0A6YYG9 625 aa19.26■□□□□ 0.67
VPS28-205ENST00000526204 A0A1W2PQD3 144 aa19.26■□□□□ 0.67
VPS28-205ENST00000526204 HCRTR2O43614 444 aa19.26■□□□□ 0.67
VPS28-205ENST00000526204 SSNA1O43805 119 aa19.26■□□□□ 0.67
VPS28-205ENST00000526204 EIF4E2O60573 245 aaKnown RBP19.26■□□□□ 0.67
VPS28-205ENST00000526204 EPHA4P54764 986 aa19.26■□□□□ 0.67
VPS28-205ENST00000526204 RASGEF1BQ0VAM2 473 aa19.26■□□□□ 0.67
VPS28-205ENST00000526204 C1QTNF12Q5T7M4 302 aa19.26■□□□□ 0.67
VPS28-205ENST00000526204 SDR16C5Q8N3Y7 309 aa19.26■□□□□ 0.67
VPS28-205ENST00000526204 ZNF417Q8TAU3 575 aa19.26■□□□□ 0.67
VPS28-205ENST00000526204 THRSPQ92748 146 aa19.26■□□□□ 0.67
VPS28-205ENST00000526204 ZNF524Q96C55 264 aa19.26■□□□□ 0.67
VPS28-205ENST00000526204 SLC23A1Q9UHI7 598 aa19.26■□□□□ 0.67
VPS28-205ENST00000526204 TRAV36DV7A0A075B6V5 113 aa19.25■□□□□ 0.67
VPS28-205ENST00000526204 TVP23AA6NH52 213 aa19.25■□□□□ 0.67
VPS28-205ENST00000526204 OR4C45A6NMZ5 311 aa19.25■□□□□ 0.67
VPS28-205ENST00000526204 CDC40O60508 579 aaKnown RBP eCLIP19.25■□□□□ 0.67
VPS28-205ENST00000526204 ZNF254O75437 659 aa19.25■□□□□ 0.67
VPS28-205ENST00000526204 TGM6O95932 706 aa19.25■□□□□ 0.67
VPS28-205ENST00000526204 ATXN8OSP0DMR3 200 aa19.25■□□□□ 0.67
VPS28-205ENST00000526204 OR1D4P47884 311 aa19.25■□□□□ 0.67
VPS28-205ENST00000526204 CLDN12P56749 244 aa19.25■□□□□ 0.67
VPS28-205ENST00000526204 HLA-DQA1Q5Y7H0 255 aa19.25■□□□□ 0.67
VPS28-205ENST00000526204 OGFOD3Q6PK18 319 aa19.25■□□□□ 0.67
VPS28-205ENST00000526204 LRRTM1Q86UE6 522 aa19.25■□□□□ 0.67
VPS28-205ENST00000526204 DND1Q8IYX4 353 aaKnown RBP19.25■□□□□ 0.67
VPS28-205ENST00000526204 OR2G2Q8NGZ5 317 aa19.25■□□□□ 0.67
VPS28-205ENST00000526204 GPR148Q8TDV2 347 aa19.25■□□□□ 0.67
VPS28-205ENST00000526204 TSLPQ969D9 159 aa19.25■□□□□ 0.67
VPS28-205ENST00000526204 GAL3ST4Q96RP7 486 aa19.25■□□□□ 0.67
VPS28-205ENST00000526204 TPSD1Q9BZJ3 242 aa19.25■□□□□ 0.67
VPS28-205ENST00000526204 FKBP7Q9Y680 259 aa19.25■□□□□ 0.67
VPS28-205ENST00000526204 TDRD6O60522 2096 aaKnown RBP19.25■□□□□ 0.67
VPS28-205ENST00000526204 RHPN2P1A8MT19 583 aa19.25■□□□□ 0.67
VPS28-205ENST00000526204 METTL12A8MUP2 240 aa19.25■□□□□ 0.67
VPS28-205ENST00000526204 H3BMH7 237 aa19.25■□□□□ 0.67
VPS28-205ENST00000526204 H7C1C5 153 aa19.25■□□□□ 0.67
VPS28-205ENST00000526204 ACOT7O00154 380 aa19.25■□□□□ 0.67
VPS28-205ENST00000526204 KHDRBS3O75525 346 aaKnown RBP19.25■□□□□ 0.67
VPS28-205ENST00000526204 AKR7A3O95154 331 aa19.25■□□□□ 0.67
VPS28-205ENST00000526204 SOX2P48431 317 aa19.25■□□□□ 0.67
VPS28-205ENST00000526204 LCN6P62502 163 aa19.25■□□□□ 0.67
VPS28-205ENST00000526204 C19orf57Q0VDD7 668 aa19.25■□□□□ 0.67
VPS28-205ENST00000526204 KCNAB1Q14722 419 aa19.25■□□□□ 0.67
VPS28-205ENST00000526204 SFRP4Q6FHJ7 346 aaPredicted RBP19.25■□□□□ 0.67
VPS28-205ENST00000526204 DPY19L4Q7Z388 723 aa19.25■□□□□ 0.67
VPS28-205ENST00000526204 SERPINA12Q8IW75 414 aa19.25■□□□□ 0.67
VPS28-205ENST00000526204 ZNF676Q8N7Q3 588 aa19.25■□□□□ 0.67
VPS28-205ENST00000526204 OR11G2Q8NGC1 345 aa19.25■□□□□ 0.67
VPS28-205ENST00000526204 IRF2BPLQ9H1B7 796 aa19.25■□□□□ 0.67
VPS28-205ENST00000526204 TRBV5-7A0A0A0MS05 114 aa19.24■□□□□ 0.67
VPS28-205ENST00000526204 ANKRD20A5PA0PJZ0 165 aa19.24■□□□□ 0.67
VPS28-205ENST00000526204 LMO7DNF2Z398 122 aa19.24■□□□□ 0.67
VPS28-205ENST00000526204 XKRYO14609 159 aa19.24■□□□□ 0.67
VPS28-205ENST00000526204 NDUFB5O43674 189 aa19.24■□□□□ 0.67
VPS28-205ENST00000526204 GMDSO60547 372 aa19.24■□□□□ 0.67
VPS28-205ENST00000526204 MT-ATP6P00846 226 aa19.24■□□□□ 0.67
VPS28-205ENST00000526204 BGLAPP02818 100 aa19.24■□□□□ 0.67
VPS28-205ENST00000526204 ADRA2CP18825 462 aa19.24■□□□□ 0.67
VPS28-205ENST00000526204 ITPKBP27987 946 aa19.24■□□□□ 0.67
VPS28-205ENST00000526204 C14orf28Q4W4Y0 310 aa19.24■□□□□ 0.67
VPS28-205ENST00000526204 ZBTB37Q5TC79 503 aa19.24■□□□□ 0.67
VPS28-205ENST00000526204 MAMDC2Q7Z304 686 aaPredicted RBP19.24■□□□□ 0.67
VPS28-205ENST00000526204 PRR22Q8IZ63 422 aa19.24■□□□□ 0.67
VPS28-205ENST00000526204 CARFQ8N187 725 aa19.24■□□□□ 0.67
VPS28-205ENST00000526204 THEM6Q8WUY1 208 aa19.24■□□□□ 0.67
VPS28-205ENST00000526204 SYT4Q9H2B2 425 aa19.24■□□□□ 0.67
VPS28-205ENST00000526204 MRPL15Q9P015 296 aaKnown RBP19.24■□□□□ 0.67
VPS28-205ENST00000526204 SCP2D1Q9UJQ7 156 aa19.24■□□□□ 0.67
VPS28-205ENST00000526204 ANXA2P2A6NMY6 339 aa19.24■□□□□ 0.67
VPS28-205ENST00000526204 ALG1L2C9J202 215 aa19.24■□□□□ 0.67
VPS28-205ENST00000526204 TO15178 435 aa19.24■□□□□ 0.67
VPS28-205ENST00000526204 ANXA2P07355 339 aaKnown RBP19.24■□□□□ 0.67
VPS28-205ENST00000526204 PGCP20142 388 aa19.24■□□□□ 0.67
VPS28-205ENST00000526204 CDK2P24941 298 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms