RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 MED29Q9NX70 200 aa12.57□□□□□ -0.4
NUP54-216ENST00000514901 LYVE1Q9Y5Y7 322 aa12.57□□□□□ -0.4
NUP54-216ENST00000514901 ITPR2Q14571 2701 aa12.56□□□□□ -0.4
NUP54-216ENST00000514901 PRR14LQ5THK1 2151 aa12.56□□□□□ -0.4
NUP54-216ENST00000514901 ABCA12Q86UK0 2595 aa12.56□□□□□ -0.4
NUP54-216ENST00000514901 A6NNC1 897 aa12.56□□□□□ -0.4
NUP54-216ENST00000514901 MCIDASD6RGH6 385 aa12.56□□□□□ -0.4
NUP54-216ENST00000514901 CDC42EP2O14613 210 aa12.56□□□□□ -0.4
NUP54-216ENST00000514901 PTP4A3O75365 173 aa12.56□□□□□ -0.4
NUP54-216ENST00000514901 UPK3AO75631 287 aa12.56□□□□□ -0.4
NUP54-216ENST00000514901 CST1P01037 141 aa12.56□□□□□ -0.4
NUP54-216ENST00000514901 F13BP05160 661 aa12.56□□□□□ -0.4
NUP54-216ENST00000514901 ITGA5P08648 1049 aa12.56□□□□□ -0.4
NUP54-216ENST00000514901 CRYGSP22914 178 aa12.56□□□□□ -0.4
NUP54-216ENST00000514901 PAX7P23759 505 aa12.56□□□□□ -0.4
NUP54-216ENST00000514901 TLE4Q04727 773 aa12.56□□□□□ -0.4
NUP54-216ENST00000514901 CAMK2DQ13557 499 aa12.56□□□□□ -0.4
NUP54-216ENST00000514901 STK11Q15831 433 aa12.56□□□□□ -0.4
NUP54-216ENST00000514901 FAM205BPQ63HN1 556 aa12.56□□□□□ -0.4
NUP54-216ENST00000514901 C1orf94Q6P1W5 598 aa12.56□□□□□ -0.4
NUP54-216ENST00000514901 YTHDF3Q7Z739 585 aaKnown RBP12.56□□□□□ -0.4
NUP54-216ENST00000514901 ZER1Q7Z7L7 766 aa12.56□□□□□ -0.4
NUP54-216ENST00000514901 C17orf78Q8N4C9 275 aa12.56□□□□□ -0.4
NUP54-216ENST00000514901 OR13C2Q8NGS9 318 aa12.56□□□□□ -0.4
NUP54-216ENST00000514901 OR6N1Q8NGY5 312 aa12.56□□□□□ -0.4
NUP54-216ENST00000514901 MOSPD2Q8NHP6 518 aa12.56□□□□□ -0.4
NUP54-216ENST00000514901 GNPDA2Q8TDQ7 276 aa12.56□□□□□ -0.4
NUP54-216ENST00000514901 ZNF566Q969W8 418 aa12.56□□□□□ -0.4
NUP54-216ENST00000514901 MUCL1Q96DR8 90 aa12.56□□□□□ -0.4
NUP54-216ENST00000514901 RSRC1Q96IZ7 334 aaKnown RBP12.56□□□□□ -0.4
NUP54-216ENST00000514901 EMC6Q9BV81 110 aa12.56□□□□□ -0.4
NUP54-216ENST00000514901 TXNIPQ9H3M7 391 aa12.56□□□□□ -0.4
NUP54-216ENST00000514901 NGBQ9NPG2 151 aa12.56□□□□□ -0.4
NUP54-216ENST00000514901 SAMHD1Q9Y3Z3 626 aaKnown RBP12.56□□□□□ -0.4
NUP54-216ENST00000514901 TRAV27A0A087WT01 109 aa12.55□□□□□ -0.4
NUP54-216ENST00000514901 FAM221AA4D161 298 aa12.55□□□□□ -0.4
NUP54-216ENST00000514901 UNC119BA6NIH7 251 aa12.55□□□□□ -0.4
NUP54-216ENST00000514901 OR5H1A6NKK0 313 aa12.55□□□□□ -0.4
NUP54-216ENST00000514901 GNGT2O14610 69 aa12.55□□□□□ -0.4
NUP54-216ENST00000514901 KLF4O43474 513 aa12.55□□□□□ -0.4
NUP54-216ENST00000514901 FKBP6O75344 327 aa12.55□□□□□ -0.4
NUP54-216ENST00000514901 CCNB2O95067 398 aa12.55□□□□□ -0.4
NUP54-216ENST00000514901 IGHG1P01857 330 aa12.55□□□□□ -0.4
NUP54-216ENST00000514901 IGHMP01871 453 aa12.55□□□□□ -0.4
NUP54-216ENST00000514901 HOXB1P14653 301 aaPredicted RBP12.55□□□□□ -0.4
NUP54-216ENST00000514901 FPR3P25089 353 aa12.55□□□□□ -0.4
NUP54-216ENST00000514901 CSNK1A1P48729 337 aa12.55□□□□□ -0.4
NUP54-216ENST00000514901 CTXN1P60606 82 aa12.55□□□□□ -0.4
NUP54-216ENST00000514901 ROR2Q01974 943 aaKnown RBP12.55□□□□□ -0.4
NUP54-216ENST00000514901 FHL1Q13642 323 aa12.55□□□□□ -0.4
NUP54-216ENST00000514901 TSC22D1Q15714 1073 aa12.55□□□□□ -0.4
NUP54-216ENST00000514901 GABRA6Q16445 453 aa12.55□□□□□ -0.4
NUP54-216ENST00000514901 ACKR1Q16570 336 aa12.55□□□□□ -0.4
NUP54-216ENST00000514901 CARD17Q5XLA6 110 aa12.55□□□□□ -0.4
NUP54-216ENST00000514901 MEX3DQ86XN8 651 aaKnown RBP12.55□□□□□ -0.4
NUP54-216ENST00000514901 C10orf67Q8IYJ2 551 aa12.55□□□□□ -0.4
NUP54-216ENST00000514901 OR4C15Q8NGM1 316 aa12.55□□□□□ -0.4
NUP54-216ENST00000514901 GPR35Q9HC97 309 aa12.55□□□□□ -0.4
NUP54-216ENST00000514901 SIGLEC7Q9Y286 467 aa12.55□□□□□ -0.4
NUP54-216ENST00000514901 SPG11Q96JI7 2443 aa12.54□□□□□ -0.4
NUP54-216ENST00000514901 A6NIZ1 184 aa12.54□□□□□ -0.4
NUP54-216ENST00000514901 M0R3G1 203 aa12.54□□□□□ -0.4
NUP54-216ENST00000514901 CTAG2O75638 210 aa12.54□□□□□ -0.4
NUP54-216ENST00000514901 RAD51DO75771 328 aa12.54□□□□□ -0.4
NUP54-216ENST00000514901 NDUFB2O95178 105 aa12.54□□□□□ -0.4
NUP54-216ENST00000514901 THBDP07204 575 aa12.54□□□□□ -0.4
NUP54-216ENST00000514901 CD14P08571 375 aa12.54□□□□□ -0.4
NUP54-216ENST00000514901 NR2C1P13056 603 aa12.54□□□□□ -0.4
NUP54-216ENST00000514901 HOXC12P31275 282 aa12.54□□□□□ -0.4
NUP54-216ENST00000514901 RPL4P36578 427 aaKnown RBP12.54□□□□□ -0.4
NUP54-216ENST00000514901 GSSP48637 474 aa12.54□□□□□ -0.4
NUP54-216ENST00000514901 RAP1BP61224 184 aa12.54□□□□□ -0.4
NUP54-216ENST00000514901 RPL27P61353 136 aaKnown RBP12.54□□□□□ -0.4
NUP54-216ENST00000514901 RAP1AP62834 184 aa12.54□□□□□ -0.4
NUP54-216ENST00000514901 TSPAN31Q12999 210 aa12.54□□□□□ -0.4
NUP54-216ENST00000514901 MICAQ29983 383 aa12.54□□□□□ -0.4
NUP54-216ENST00000514901 ARMC4Q5T2S8 1044 aa12.54□□□□□ -0.4
NUP54-216ENST00000514901 ANKRD16Q6P6B7 361 aa12.54□□□□□ -0.4
NUP54-216ENST00000514901 C22orf34Q6ZV56 151 aa12.54□□□□□ -0.4
NUP54-216ENST00000514901 LRRC75AQ8NAA5 344 aa12.54□□□□□ -0.4
NUP54-216ENST00000514901 FNDC8Q8TC99 324 aa12.54□□□□□ -0.4
NUP54-216ENST00000514901 MAGEE2Q8TD90 523 aaPredicted RBP12.54□□□□□ -0.4
NUP54-216ENST00000514901 ASB10Q8WXI3 467 aa12.54□□□□□ -0.4
NUP54-216ENST00000514901 TMEM54Q969K7 222 aa12.54□□□□□ -0.4
NUP54-216ENST00000514901 ZC3HAV1LQ96H79 300 aaKnown RBP12.54□□□□□ -0.4
NUP54-216ENST00000514901 ALKBH3Q96Q83 286 aaPredicted RBP12.54□□□□□ -0.4
NUP54-216ENST00000514901 ULBP2Q9BZM5 246 aa12.54□□□□□ -0.4
NUP54-216ENST00000514901 CRLF2Q9HC73 371 aa12.54□□□□□ -0.4
NUP54-216ENST00000514901 OBP2BQ9NPH6 170 aa12.54□□□□□ -0.4
NUP54-216ENST00000514901 RASSF1Q9NS23 344 aa12.54□□□□□ -0.4
NUP54-216ENST00000514901 GLTPQ9NZD2 209 aa12.54□□□□□ -0.4
NUP54-216ENST00000514901 DNAJB9Q9UBS3 223 aa12.54□□□□□ -0.4
NUP54-216ENST00000514901 ENTPD5O75356 428 aa12.53□□□□□ -0.4
NUP54-216ENST00000514901 PGA4P0DJD7 388 aa12.53□□□□□ -0.4
NUP54-216ENST00000514901 PGA3P0DJD8 388 aa12.53□□□□□ -0.4
NUP54-216ENST00000514901 ACADSP16219 412 aa12.53□□□□□ -0.4
NUP54-216ENST00000514901 NR1H2P55055 460 aa12.53□□□□□ -0.4
NUP54-216ENST00000514901 FOXG1P55316 489 aaPredicted RBP12.53□□□□□ -0.4
NUP54-216ENST00000514901 CLRN1P58418 232 aa12.53□□□□□ -0.4
NUP54-216ENST00000514901 LGALS3BPQ08380 585 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms