RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 OR5K3A6NET4 321 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 ADAM23O75077 832 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 PAPLNO95428 1278 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 CD160O95971 181 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 IFNA2P01563 188 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 MRPL19P49406 292 aaKnown RBP11.66□□□□□ -0.54
USP53-209ENST00000514665 TAS2R31P59538 309 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 RPL19P84098 196 aaKnown RBP11.66□□□□□ -0.54
USP53-209ENST00000514665 AGERQ15109 404 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 USF2Q15853 346 aaPredicted RBP11.66□□□□□ -0.54
USP53-209ENST00000514665 NIPAL3Q6P499 406 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 SULF2Q8IWU5 870 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 OR52I2Q8NH67 350 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 FAM3DQ96BQ1 224 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 HHIPL1Q96JK4 782 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 SORCS2Q96PQ0 1159 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 CSF3RQ99062 836 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 NEURL2Q9BR09 285 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 EMC6Q9BV81 110 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 EVA1AQ9H8M9 152 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 WASH6PQ9NQA3 447 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 CKAP5Q14008 2032 aa11.66□□□□□ -0.54
USP53-209ENST00000514665 ZDBF2Q9HCK1 2354 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 CSF3P09919 207 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 DDOSTP39656 456 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 RAB5BP61020 215 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 BTG2P78543 158 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 ARHGAP11BQ3KRB8 267 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 DHRS4L2Q6PKH6 230 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 Q6ZTK2 550 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 GLCCI1Q86VQ1 547 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 AMER3Q8N944 861 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 OR5T1Q8NG75 326 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 ISG20L2Q9H9L3 353 aaKnown RBP11.65□□□□□ -0.54
USP53-209ENST00000514665 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 SMCO3A2RU48 225 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 BLACEA4D250 179 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 P2RX6O15547 441 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 DNAJB6O75190 326 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 SCRG1O75711 98 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 CEACAM5P06731 702 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 CD1CP29017 333 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 POLR2HP52434 150 aaKnown RBP11.65□□□□□ -0.54
USP53-209ENST00000514665 TPBGQ13641 420 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 KCNAB1Q14722 419 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 SLC36A2Q495M3 483 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 MRPL21Q7Z2W9 205 aaKnown RBP11.65□□□□□ -0.54
USP53-209ENST00000514665 FGGYQ96C11 551 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 GIMAP5Q96F15 307 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 DCLRE1CQ96SD1 692 aaKnown RBP11.65□□□□□ -0.54
USP53-209ENST00000514665 SLC38A1Q9H2H9 487 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 PTTG3PQ9NZH4 202 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 TRIP12Q14669 1992 aaPredicted RBP11.65□□□□□ -0.54
USP53-209ENST00000514665 DPM1O60762 260 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 KCNK2O95069 426 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 THBS1P07996 1170 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 ANXA7P20073 488 aaKnown RBP11.65□□□□□ -0.54
USP53-209ENST00000514665 EVX1P49640 407 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 HEPHL1Q6MZM0 1159 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 ZNF679Q8IYX0 411 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 TEX19Q8NA77 164 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 OR14A16Q8NHC5 309 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 ZG16BQ96DA0 208 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 CNTNAP3BQ96NU0 1288 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 STACQ99469 402 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 NICN1Q9BSH3 213 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 TMEM59Q9BXS4 323 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 OR10A2Q9H208 303 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 LYRM4Q9HD34 91 aa11.65□□□□□ -0.54
USP53-209ENST00000514665 IGLV3-16A0A075B6K0 115 aa11.65□□□□□ -0.55
USP53-209ENST00000514665 FADS1O60427 444 aa11.65□□□□□ -0.55
USP53-209ENST00000514665 OR7C1O76099 320 aaPredicted RBP11.65□□□□□ -0.55
USP53-209ENST00000514665 TPT1P13693 172 aaKnown RBP11.65□□□□□ -0.55
USP53-209ENST00000514665 CDK2P24941 298 aa11.65□□□□□ -0.55
USP53-209ENST00000514665 ARF1P84077 181 aaKnown RBP11.65□□□□□ -0.55
USP53-209ENST00000514665 RUNX2Q13950 521 aa11.65□□□□□ -0.55
USP53-209ENST00000514665 YIF1BQ5BJH7 314 aa11.65□□□□□ -0.55
USP53-209ENST00000514665 ZNF529Q6P280 563 aa11.65□□□□□ -0.55
USP53-209ENST00000514665 RCBTB1Q8NDN9 531 aa11.65□□□□□ -0.55
USP53-209ENST00000514665 S100PBPQ96BU1 408 aa11.65□□□□□ -0.55
USP53-209ENST00000514665 MBD1Q9UIS9 605 aaPredicted RBP11.65□□□□□ -0.55
USP53-209ENST00000514665 EDARQ9UNE0 448 aa11.65□□□□□ -0.55
USP53-209ENST00000514665 BCAT2O15382 392 aaPredicted RBP11.64□□□□□ -0.55
USP53-209ENST00000514665 MSX1P28360 303 aa11.64□□□□□ -0.55
USP53-209ENST00000514665 RAE1P78406 368 aaKnown RBP11.64□□□□□ -0.55
USP53-209ENST00000514665 MC2RQ01718 297 aa11.64□□□□□ -0.55
USP53-209ENST00000514665 TEKQ02763 1124 aa11.64□□□□□ -0.55
USP53-209ENST00000514665 EXOSC6Q5RKV6 272 aaKnown RBP11.64□□□□□ -0.55
USP53-209ENST00000514665 CCDC71Q8IV32 467 aaPredicted RBP11.64□□□□□ -0.55
USP53-209ENST00000514665 ZNF695Q8IW36 515 aa11.64□□□□□ -0.55
USP53-209ENST00000514665 OR4K15Q8NH41 348 aa11.64□□□□□ -0.55
USP53-209ENST00000514665 ZFPM2Q8WW38 1151 aa11.64□□□□□ -0.55
USP53-209ENST00000514665 IL1F10Q8WWZ1 152 aa11.64□□□□□ -0.55
USP53-209ENST00000514665 PIGCQ92535 297 aa11.64□□□□□ -0.55
USP53-209ENST00000514665 TMEM43Q9BTV4 400 aa11.64□□□□□ -0.55
USP53-209ENST00000514665 DNTTIP1Q9H147 329 aa11.64□□□□□ -0.55
USP53-209ENST00000514665 C20orf85Q9H1P6 137 aa11.64□□□□□ -0.55
USP53-209ENST00000514665 ING1Q9UK53 422 aaPredicted RBP11.64□□□□□ -0.55
USP53-209ENST00000514665 GPR55Q9Y2T6 319 aaPredicted RBP11.64□□□□□ -0.55
USP53-209ENST00000514665 UNC13CQ8NB66 2214 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms