RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 FOXN4Q96NZ1 517 aa16.3■□□□□ 0.2
VIM-206ENST00000487938 SORCS2Q96PQ0 1159 aa16.3■□□□□ 0.2
VIM-206ENST00000487938 SEC22CQ9BRL7 303 aa16.3■□□□□ 0.2
VIM-206ENST00000487938 SLITRK2Q9H156 845 aa16.3■□□□□ 0.2
VIM-206ENST00000487938 AKAP7Q9P0M2 348 aaPredicted RBP16.3■□□□□ 0.2
VIM-206ENST00000487938 MOKQ9UQ07 419 aa16.3■□□□□ 0.2
VIM-206ENST00000487938 TRAV8-7A0A075B6U6 113 aa16.3■□□□□ 0.2
VIM-206ENST00000487938 A0A1B0GVI7 797 aa16.3■□□□□ 0.2
VIM-206ENST00000487938 CDC14CA4D256 554 aa16.3■□□□□ 0.2
VIM-206ENST00000487938 C10orf142B7Z368 130 aa16.3■□□□□ 0.2
VIM-206ENST00000487938 H0YC42 278 aa16.3■□□□□ 0.2
VIM-206ENST00000487938 DCTDP32321 178 aa16.3■□□□□ 0.2
VIM-206ENST00000487938 CCR5P51681 352 aa16.3■□□□□ 0.2
VIM-206ENST00000487938 ART1P52961 327 aa16.3■□□□□ 0.2
VIM-206ENST00000487938 SLC37A1P57057 533 aa16.3■□□□□ 0.2
VIM-206ENST00000487938 KCNAB1Q14722 419 aa16.3■□□□□ 0.2
VIM-206ENST00000487938 SLC25A25Q6KCM7 469 aa16.3■□□□□ 0.2
VIM-206ENST00000487938 KCTD20Q7Z5Y7 419 aa16.3■□□□□ 0.2
VIM-206ENST00000487938 TMPRSS12Q86WS5 348 aa16.3■□□□□ 0.2
VIM-206ENST00000487938 DND1Q8IYX4 353 aaKnown RBP16.3■□□□□ 0.2
VIM-206ENST00000487938 C17orf50Q8WW18 174 aa16.3■□□□□ 0.2
VIM-206ENST00000487938 HGDQ93099 445 aa16.3■□□□□ 0.2
VIM-206ENST00000487938 NXPE2Q96DL1 559 aa16.3■□□□□ 0.2
VIM-206ENST00000487938 SLC38A3Q99624 504 aa16.3■□□□□ 0.2
VIM-206ENST00000487938 NRSN2Q9GZP1 204 aa16.3■□□□□ 0.2
VIM-206ENST00000487938 C8orf33Q9H7E9 229 aaPredicted RBP16.3■□□□□ 0.2
VIM-206ENST00000487938 SCP2D1Q9UJQ7 156 aa16.3■□□□□ 0.2
VIM-206ENST00000487938 PRUNE2Q8WUY3 3088 aa16.29■□□□□ 0.2
VIM-206ENST00000487938 BLACEA4D250 179 aa16.29■□□□□ 0.2
VIM-206ENST00000487938 ABHD16AO95870 558 aa16.29■□□□□ 0.2
VIM-206ENST00000487938 CAPZBP47756 277 aa16.29■□□□□ 0.2
VIM-206ENST00000487938 OR1D4P47884 311 aa16.29■□□□□ 0.2
VIM-206ENST00000487938 GABRA4P48169 554 aa16.29■□□□□ 0.2
VIM-206ENST00000487938 BLKP51451 505 aa16.29■□□□□ 0.2
VIM-206ENST00000487938 CCINQ13939 588 aa16.29■□□□□ 0.2
VIM-206ENST00000487938 POU4F3Q15319 338 aa16.29■□□□□ 0.2
VIM-206ENST00000487938 ESCO2Q56NI9 601 aa16.29■□□□□ 0.2
VIM-206ENST00000487938 C1QL3Q5VWW1 255 aa16.29■□□□□ 0.2
VIM-206ENST00000487938 THADAQ6YHU6 1953 aa16.29■□□□□ 0.2
VIM-206ENST00000487938 LRRC69Q6ZNQ3 347 aa16.29■□□□□ 0.2
VIM-206ENST00000487938 LRRTM1Q86UE6 522 aa16.29■□□□□ 0.2
VIM-206ENST00000487938 ELMOD2Q8IZ81 293 aa16.29■□□□□ 0.2
VIM-206ENST00000487938 ZDHHC19Q8WVZ1 309 aaPredicted RBP16.29■□□□□ 0.2
VIM-206ENST00000487938 LIPHQ8WWY8 451 aa16.29■□□□□ 0.2
VIM-206ENST00000487938 SYT4Q9H2B2 425 aa16.29■□□□□ 0.2
VIM-206ENST00000487938 NOX3Q9HBY0 568 aa16.29■□□□□ 0.2
VIM-206ENST00000487938 TAS2R10Q9NYW0 307 aa16.29■□□□□ 0.2
VIM-206ENST00000487938 TMEM131Q92545 1883 aa16.29■□□□□ 0.2
VIM-206ENST00000487938 WISP1O95388 367 aa16.29■□□□□ 0.2
VIM-206ENST00000487938 IL33O95760 270 aa16.29■□□□□ 0.2
VIM-206ENST00000487938 ADH7P40394 386 aa16.29■□□□□ 0.2
VIM-206ENST00000487938 BLVRAP53004 296 aa16.29■□□□□ 0.2
VIM-206ENST00000487938 TOMM34Q15785 309 aaPredicted RBP16.29■□□□□ 0.2
VIM-206ENST00000487938 CHCHD2P9Q5T1J5 151 aaPredicted RBP16.29■□□□□ 0.2
VIM-206ENST00000487938 ZSCAN2Q7Z7L9 614 aaPredicted RBP16.29■□□□□ 0.2
VIM-206ENST00000487938 ZNF676Q8N7Q3 588 aa16.29■□□□□ 0.2
VIM-206ENST00000487938 ADAMTS18Q8TE60 1221 aa16.29■□□□□ 0.2
VIM-206ENST00000487938 NSMAFQ92636 917 aa16.29■□□□□ 0.2
VIM-206ENST00000487938 TSLPQ969D9 159 aa16.29■□□□□ 0.2
VIM-206ENST00000487938 HAVCR1Q96D42 359 aa16.29■□□□□ 0.2
VIM-206ENST00000487938 GAL3ST4Q96RP7 486 aa16.29■□□□□ 0.2
VIM-206ENST00000487938 PLCL2Q9UPR0 1127 aa16.29■□□□□ 0.2
VIM-206ENST00000487938 SLC6A5Q9Y345 797 aa16.29■□□□□ 0.2
VIM-206ENST00000487938 CACNA1CQ13936 2221 aa16.29■□□□□ 0.2
VIM-206ENST00000487938 ANKRD20A5PA0PJZ0 165 aa16.28■□□□□ 0.2
VIM-206ENST00000487938 SHISA7A6NL88 538 aa16.28■□□□□ 0.2
VIM-206ENST00000487938 C11orf98E9PRG8 122 aa16.28■□□□□ 0.2
VIM-206ENST00000487938 G3V3Q6 166 aa16.28■□□□□ 0.2
VIM-206ENST00000487938 MPC2O95563 127 aa16.28■□□□□ 0.2
VIM-206ENST00000487938 HIST1H2ABP04908 130 aa16.28■□□□□ 0.2
VIM-206ENST00000487938 CALCBP10092 127 aa16.28■□□□□ 0.2
VIM-206ENST00000487938 ANXA7P20073 488 aaKnown RBP16.28■□□□□ 0.2
VIM-206ENST00000487938 ITPKBP27987 946 aa16.28■□□□□ 0.2
VIM-206ENST00000487938 TAS2R20P59543 309 aa16.28■□□□□ 0.2
VIM-206ENST00000487938 AP3S2P59780 193 aa16.28■□□□□ 0.2
VIM-206ENST00000487938 COL28A1Q2UY09 1125 aa16.28■□□□□ 0.2
VIM-206ENST00000487938 LINC00303Q3SY05 128 aa16.28■□□□□ 0.2
VIM-206ENST00000487938 NKAIN2Q5VXU1 208 aa16.28■□□□□ 0.2
VIM-206ENST00000487938 HIST3H2AQ7L7L0 130 aa16.28■□□□□ 0.2
VIM-206ENST00000487938 TMEM151BQ8IW70 566 aa16.28■□□□□ 0.2
VIM-206ENST00000487938 PM20D2Q8IYS1 436 aa16.28■□□□□ 0.2
VIM-206ENST00000487938 HIST1H2ACQ93077 130 aa16.28■□□□□ 0.2
VIM-206ENST00000487938 CCDC74AQ96AQ1 378 aa16.28■□□□□ 0.2
VIM-206ENST00000487938 MIB2Q96AX9 1013 aa16.28■□□□□ 0.2
VIM-206ENST00000487938 AMELYQ99218 206 aa16.28■□□□□ 0.2
VIM-206ENST00000487938 SEMA4CQ9C0C4 833 aa16.28■□□□□ 0.2
VIM-206ENST00000487938 GPR27Q9NS67 375 aa16.28■□□□□ 0.2
VIM-206ENST00000487938 PTTG3PQ9NZH4 202 aa16.28■□□□□ 0.2
VIM-206ENST00000487938 LAMA1P25391 3075 aa16.28■□□□□ 0.2
VIM-206ENST00000487938 PCDH15Q96QU1 1955 aa16.28■□□□□ 0.2
VIM-206ENST00000487938 A0A1W2PPC4 97 aa16.28■□□□□ 0.2
VIM-206ENST00000487938 ANXA2P2A6NMY6 339 aa16.28■□□□□ 0.2
VIM-206ENST00000487938 SULT1B1O43704 296 aa16.28■□□□□ 0.2
VIM-206ENST00000487938 ICOSLGO75144 302 aa16.28■□□□□ 0.2
VIM-206ENST00000487938 ANXA2P07355 339 aaKnown RBP16.28■□□□□ 0.2
VIM-206ENST00000487938 RAB40ALP0C0E4 278 aa16.28■□□□□ 0.2
VIM-206ENST00000487938 APEHP13798 732 aaKnown RBP16.28■□□□□ 0.2
VIM-206ENST00000487938 ENPP1P22413 925 aa16.28■□□□□ 0.2
VIM-206ENST00000487938 LTBRP36941 435 aa16.28■□□□□ 0.2
VIM-206ENST00000487938 PPICP45877 212 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms