RNA–Protein interactions for RNA: ENST00000429102.6

CDH3-202, Transcript of cadherin 3, humanhuman

TSL 1 (best) BASIC

Gene CDH3, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-202ENST00000429102 KCTD9Q7L273 389 aa11.38□□□□□ -0.59
CDH3-202ENST00000429102 PM20D2Q8IYS1 436 aa11.38□□□□□ -0.59
CDH3-202ENST00000429102 MUC20Q8N307 709 aaPredicted RBP11.38□□□□□ -0.59
CDH3-202ENST00000429102 TOX2Q96NM4 488 aa11.38□□□□□ -0.59
CDH3-202ENST00000429102 ADOQ96SZ5 270 aa11.38□□□□□ -0.59
CDH3-202ENST00000429102 TIMM29Q9BSF4 260 aa11.38□□□□□ -0.59
CDH3-202ENST00000429102 MFFQ9GZY8 342 aa11.38□□□□□ -0.59
CDH3-202ENST00000429102 KIR3DX1Q9H7L2 352 aa11.38□□□□□ -0.59
CDH3-202ENST00000429102 ANKRD10Q9NXR5 420 aa11.38□□□□□ -0.59
CDH3-202ENST00000429102 SHOXO15266 292 aa11.38□□□□□ -0.59
CDH3-202ENST00000429102 ST6GAL1P15907 406 aa11.38□□□□□ -0.59
CDH3-202ENST00000429102 AP3S2P59780 193 aa11.38□□□□□ -0.59
CDH3-202ENST00000429102 BDH1Q02338 343 aa11.38□□□□□ -0.59
CDH3-202ENST00000429102 SPOCK1Q08629 439 aa11.38□□□□□ -0.59
CDH3-202ENST00000429102 CLLU1Q5K131 121 aa11.38□□□□□ -0.59
CDH3-202ENST00000429102 MARCH3Q86UD3 253 aa11.38□□□□□ -0.59
CDH3-202ENST00000429102 OOSP2Q86WS3 158 aa11.38□□□□□ -0.59
CDH3-202ENST00000429102 NPEPL1Q8NDH3 523 aa11.38□□□□□ -0.59
CDH3-202ENST00000429102 OR4S1Q8NGB4 309 aa11.38□□□□□ -0.59
CDH3-202ENST00000429102 THAP3Q8WTV1 239 aaPredicted RBP11.38□□□□□ -0.59
CDH3-202ENST00000429102 CMKLR1Q99788 373 aa11.38□□□□□ -0.59
CDH3-202ENST00000429102 DNAJB12Q9NXW2 375 aaKnown RBP11.38□□□□□ -0.59
CDH3-202ENST00000429102 FRRS1LQ9P0K9 344 aa11.38□□□□□ -0.59
CDH3-202ENST00000429102 GRHPRQ9UBQ7 328 aa11.38□□□□□ -0.59
CDH3-202ENST00000429102 KCNG2Q9UJ96 466 aa11.38□□□□□ -0.59
CDH3-202ENST00000429102 FOXJ3Q9UPW0 622 aa11.38□□□□□ -0.59
CDH3-202ENST00000429102 UNC13CQ8NB66 2214 aa11.38□□□□□ -0.59
CDH3-202ENST00000429102 AIPO00170 330 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 M6PRP20645 277 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 NUDT1P36639 197 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 DIO1P49895 249 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 HLXQ14774 488 aaPredicted RBP11.37□□□□□ -0.59
CDH3-202ENST00000429102 ITPRIPL2Q3MIP1 535 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 ALG10Q5BKT4 473 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 TMEM88Q6PEY1 159 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 TMUB2Q71RG4 321 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 NR4A3Q92570 626 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 GAS2L1Q99501 681 aaPredicted RBP11.37□□□□□ -0.59
CDH3-202ENST00000429102 ACTR6Q9GZN1 396 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 PIPOXQ9P0Z9 390 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 GPR160Q9UJ42 338 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 PLXNA2O75051 1894 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 MCRIP1C9JLW8 97 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 GABARAPH6UMI1 98 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 CDC40O60508 579 aaKnown RBP eCLIP11.37□□□□□ -0.59
CDH3-202ENST00000429102 LYPD3O95274 346 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 THBS1P07996 1170 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 COL9A1P20849 921 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 SLC2A5P22732 501 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 GPM6BQ13491 265 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 TRAM1Q15629 374 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 TMEM196Q5HYL7 178 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 PRAMEF8Q5VWM4 474 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 PRAMEF7Q5VXH5 474 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 ULK3Q6PHR2 472 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 LRFN4Q6PJG9 635 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 RHOUQ7L0Q8 258 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 IQCF2Q8IXL9 164 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 ZNF321PQ8N8H1 164 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 CENPMQ9NSP4 180 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 SOHLH2Q9NX45 425 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 MAFFQ9ULX9 164 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 ZNF106Q9H2Y7 1883 aaKnown RBP11.37□□□□□ -0.59
CDH3-202ENST00000429102 SDK2Q58EX2 2172 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 CARNS1A5YM72 827 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 SUSD5O60279 629 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 RLN2P04090 185 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 VAMP1P23763 118 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 POU3F4P49335 361 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 SEZ6L2Q6UXD5 910 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 ADAT1Q9BUB4 502 aaKnown RBP11.37□□□□□ -0.59
CDH3-202ENST00000429102 ZNF471Q9BX82 626 aaPredicted RBP11.37□□□□□ -0.59
CDH3-202ENST00000429102 PITHD1Q9GZP4 211 aaPredicted RBP11.37□□□□□ -0.59
CDH3-202ENST00000429102 TAS2R3Q9NYW6 316 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 CHRNA9Q9UGM1 479 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 SLC17A4Q9Y2C5 497 aa11.37□□□□□ -0.59
CDH3-202ENST00000429102 C13orf42A0A1B0GVH6 325 aa11.36□□□□□ -0.59
CDH3-202ENST00000429102 AKR7A3O95154 331 aa11.36□□□□□ -0.59
CDH3-202ENST00000429102 CTSEP14091 401 aa11.36□□□□□ -0.59
CDH3-202ENST00000429102 DPP4P27487 766 aa11.36□□□□□ -0.59
CDH3-202ENST00000429102 S100A11P31949 105 aa11.36□□□□□ -0.59
CDH3-202ENST00000429102 SEC61A1P61619 476 aaKnown RBP11.36□□□□□ -0.59
CDH3-202ENST00000429102 SKP1P63208 163 aa11.36□□□□□ -0.59
CDH3-202ENST00000429102 ILF3Q12906 894 aaKnown RBP eCLIP11.36□□□□□ -0.59
CDH3-202ENST00000429102 UNQ6126/PRO20091Q6UXV3 157 aa11.36□□□□□ -0.59
CDH3-202ENST00000429102 GLDNQ6ZMI3 551 aaPredicted RBP11.36□□□□□ -0.59
CDH3-202ENST00000429102 TMPRSS9Q7Z410 1059 aa11.36□□□□□ -0.59
CDH3-202ENST00000429102 C3orf49Q96BT1 292 aa11.36□□□□□ -0.59
CDH3-202ENST00000429102 CPNE2Q96FN4 548 aaPredicted RBP11.36□□□□□ -0.59
CDH3-202ENST00000429102 Q9N2J8 555 aa11.36□□□□□ -0.59
CDH3-202ENST00000429102 DUSP22Q9NRW4 184 aa11.36□□□□□ -0.59
CDH3-202ENST00000429102 MRTO4Q9UKD2 239 aaKnown RBP11.36□□□□□ -0.59
CDH3-202ENST00000429102 NOP16Q9Y3C1 178 aaKnown RBP11.36□□□□□ -0.59
CDH3-202ENST00000429102 EEF1E1-BLOC1S5C9J1V9 151 aa11.36□□□□□ -0.59
CDH3-202ENST00000429102 HCRTR2O43614 444 aa11.36□□□□□ -0.59
CDH3-202ENST00000429102 MPZL1O95297 269 aa11.36□□□□□ -0.59
CDH3-202ENST00000429102 AMY2AP04746 511 aa11.36□□□□□ -0.59
CDH3-202ENST00000429102 HIST1H2ABP04908 130 aa11.36□□□□□ -0.59
CDH3-202ENST00000429102 GFOD2Q3B7J2 385 aa11.36□□□□□ -0.59
CDH3-202ENST00000429102 HIST3H2AQ7L7L0 130 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms