RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 CHD6Q8TD26 2715 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 TLN1Q9Y490 2541 aaKnown RBP2.22□□□□□ -2.05
VPS13A-208ENST00000423463 DSPP15924 2871 aaKnown RBP2.22□□□□□ -2.05
VPS13A-208ENST00000423463 IGSF10Q6WRI0 2623 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 TRGV5A0A0B4J1U4 118 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 A0A0G2JMM0 328 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 A0A1B0GTH9 108 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 A0A1W2PPB8 328 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 A0A1W2PQD3 144 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 A0A1W2PRS3 328 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 FAM166BA8MTA8 275 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 KIR3DP1A8MWS1 328 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 G3V3Y1 287 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 DYNC1I1O14576 645 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 BCKDKO14874 412 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 WNT9BO14905 357 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 HSPA12AO43301 675 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 NDUFS7O75251 213 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 NME6O75414 186 aaPredicted RBP2.22□□□□□ -2.05
VPS13A-208ENST00000423463 WISP2O76076 250 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 KDM4BO94953 1096 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 KCNK2O95069 426 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 UTS2O95399 124 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 KRT75O95678 551 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 HPNP05981 417 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 VIMP08670 466 aaKnown RBP2.22□□□□□ -2.05
VPS13A-208ENST00000423463 ABOP16442 354 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 ATP6V1C1P21283 382 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 TBXA2RP21731 343 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 PTPN6P29350 595 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 GCKP35557 465 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 RFC3P40938 356 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 PTGDSP41222 190 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 CA7P43166 264 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 UQCRFS1P47985 274 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 POLR2JP52435 117 aaKnown RBP2.22□□□□□ -2.05
VPS13A-208ENST00000423463 NME5P56597 212 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 KCNK10P57789 538 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 TUBA1BP68363 451 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 C17orf67Q0P5P2 114 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 SQLEQ14534 574 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 IRF3Q14653 427 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 LASP1Q14847 261 aaKnown RBP2.22□□□□□ -2.05
VPS13A-208ENST00000423463 NNATQ16517 81 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 DUSP5Q16690 384 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 PCGF3Q3KNV8 242 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 GLYR1Q49A26 553 aaPredicted RBP2.22□□□□□ -2.05
VPS13A-208ENST00000423463 GKAP1Q5VSY0 366 aaPredicted RBP2.22□□□□□ -2.05
VPS13A-208ENST00000423463 SAXO2Q658L1 398 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 ARHGAP11AQ6P4F7 1023 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 ANGPTL8Q6UXH0 198 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 ZNF621Q6ZSS3 439 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 GALNT5Q7Z7M9 940 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 PLCZ1Q86YW0 608 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 CLECL1Q8IZS7 167 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 COX18Q8N8Q8 333 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 SCCPDHQ8NBX0 429 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 CHDHQ8NE62 594 aaPredicted RBP2.22□□□□□ -2.05
VPS13A-208ENST00000423463 FAM57AQ8TBR7 257 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 PIK3R3Q92569 461 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 EFHD2Q96C19 240 aaPredicted RBP2.22□□□□□ -2.05
VPS13A-208ENST00000423463 NEURL3Q96EH8 262 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 RMND5BQ96G75 393 aaPredicted RBP2.22□□□□□ -2.05
VPS13A-208ENST00000423463 ADGRG7Q96K78 797 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 TEX37Q96LM6 180 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 JSRP1Q96MG2 331 aaPredicted RBP2.22□□□□□ -2.05
VPS13A-208ENST00000423463 PANX1Q96RD7 426 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 SDF2Q99470 211 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 EBF4Q9BQW3 602 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 KRTAP1-5Q9BYS1 174 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 UBQLN3Q9H347 655 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 EQTNQ9NQ60 294 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 POLE3Q9NRF9 147 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 UBQLN4Q9NRR5 601 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 EXD2Q9NVH0 621 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 KLRF1Q9NZS2 232 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 TINAGQ9UJW2 476 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 KCNS2Q9ULS6 477 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 ABCG2Q9UNQ0 655 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 LIPT1Q9Y234 373 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 TMEM5Q9Y2B1 443 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 C15orf41Q9Y2V0 281 aa2.22□□□□□ -2.05
VPS13A-208ENST00000423463 IGLV3-32A0A0A0MS00 114 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 TRGV8A0A0C4DH27 118 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 RNF103-CHMP3A0A140T963 221 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 NPIPB9F8W1W9 429 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 RFXANKO14593 260 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 SLC19A2O60779 497 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 STX11O75558 287 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 TRAPPC6AO75865 159 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 PDE9AO76083 593 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 PGM3O95394 542 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 ANP32DO95626 131 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 ACTL6AO96019 429 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 IGKV1D-16P01601 117 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 HPGDP15428 266 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 GABRB1P18505 474 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 NCF2P19878 526 aaPredicted RBP2.21□□□□□ -2.06
VPS13A-208ENST00000423463 GDF1P27539 372 aa2.21□□□□□ -2.06
VPS13A-208ENST00000423463 SRD5A2P31213 254 aa2.21□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms