RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 ACTA2P62736 377 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 ACTC1P68032 377 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 ACTA1P68133 377 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 GPR176Q14439 515 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 SYT14P1Q58G82 188 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 XKR7Q5GH72 579 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 RIPPLY2Q5TAB7 128 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 GNPDA2Q8TDQ7 276 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 MIOXQ9UGB7 285 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 MOKQ9UQ07 419 aa7.63□□□□□ -1.19
HMGB1-203ENST00000341423 AFDNP55196 1824 aaKnown RBP7.63□□□□□ -1.19
HMGB1-203ENST00000341423 A0A0U1RQS6 177 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 C13orf42A0A1B0GVH6 325 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 SERPINE3A8MV23 424 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 GABARAPH6UMI1 98 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 KRT36O76013 467 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 GABARAPO95166 117 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 STSP08842 583 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 CAPGP40121 348 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 OR1E2P47887 323 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 MARCKSL1P49006 195 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 LIPEQ05469 1076 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 FOXL1Q12952 345 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 CDK5R2Q13319 367 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 ACKR1Q16570 336 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 CTSL3PQ5NE16 218 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 LETMD1Q6P1Q0 360 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 OGFOD3Q6PK18 319 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 BNIPLQ7Z465 357 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 TMEM251Q8N6I4 163 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 EMG1Q92979 244 aaKnown RBP7.62□□□□□ -1.19
HMGB1-203ENST00000341423 GINS3Q9BRX5 216 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 ALG8Q9BVK2 526 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 PILRAQ9UKJ1 303 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 HIF3AQ9Y2N7 669 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 WNT1P04628 370 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 MSR1P21757 451 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 CDKN1AP38936 164 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 MTPNP58546 118 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 LTBQ06643 244 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 DMRTC1Q5HYR2 192 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 AVPI1Q5T686 147 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 OR10A6Q8NH74 314 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 MRPS24Q96EL2 167 aaKnown RBP7.62□□□□□ -1.19
HMGB1-203ENST00000341423 OPN3Q9H1Y3 402 aaPredicted RBP7.62□□□□□ -1.19
HMGB1-203ENST00000341423 PDP1Q9P0J1 537 aaPredicted RBP7.62□□□□□ -1.19
HMGB1-203ENST00000341423 RNF6Q9Y252 685 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 SHANK3Q9BYB0 1731 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 ST8SIA5O15466 376 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 GJB3O75712 270 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 TRIM23P36406 574 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 SEC61A1P61619 476 aaKnown RBP7.62□□□□□ -1.19
HMGB1-203ENST00000341423 MAPK11Q15759 364 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 RTL8BQ17RB0 113 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 GLRX5Q86SX6 157 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 GLB1L2Q8IW92 636 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 SGPP2Q8IWX5 399 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 MRPL24Q96A35 216 aaKnown RBP7.62□□□□□ -1.19
HMGB1-203ENST00000341423 C18orf12Q96KH6 178 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 OXGR1Q96P68 337 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 ZNF317Q96PQ6 595 aaPredicted RBP7.62□□□□□ -1.19
HMGB1-203ENST00000341423 LYSMD1Q96S90 227 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 C9orf16Q9BUW7 83 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 TREM2Q9NZC2 230 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 SLC7A8Q9UHI5 535 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 A0A1W2PRX2 142 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 FRG2CA6NGY1 282 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 FAM157AC9JC47 383 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 CPT2P23786 658 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 HOXC8P31273 242 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 CA7P43166 264 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 PUDPQ08623 228 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 PAN3Q58A45 887 aaKnown RBP7.62□□□□□ -1.19
HMGB1-203ENST00000341423 ZNF554Q86TJ5 538 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 C17orf78Q8N4C9 275 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 PLPP5Q8NEB5 264 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 SLC30A7Q8NEW0 376 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 FAM110DQ8TAY7 271 aaPredicted RBP7.62□□□□□ -1.19
HMGB1-203ENST00000341423 C1GALT1C1Q96EU7 318 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 KCNIP3Q9Y2W7 256 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 KLF2Q9Y5W3 355 aaPredicted RBP7.62□□□□□ -1.19
HMGB1-203ENST00000341423 SMCHD1A6NHR9 2005 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 ADAMTS7Q9UKP4 1686 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 SH2D1BO14796 132 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 MT-CO2P00403 227 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 SLC2A5P22732 501 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 ERFP50548 548 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 ERVFRD-1P60508 538 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 TRIM16LQ309B1 348 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 GDPGP1Q6ZNW5 385 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 GTSCR1Q86UQ5 136 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 ARMC10Q8N2F6 343 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 NUBPLQ8TB37 319 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 TMEM230Q96A57 120 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 HAO1Q9UJM8 370 aa7.62□□□□□ -1.19
HMGB1-203ENST00000341423 CITO14578 2027 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 RNF223E7ERA6 249 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 FZD6O60353 706 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 MT-ATP6P00846 226 aa7.61□□□□□ -1.19
HMGB1-203ENST00000341423 BLVRBP30043 206 aaPredicted RBP7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms