RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 CNR1P21554 472 aa2.67□□□□□ -1.98
SMCHD1-204ENST00000581226 DUSP3P51452 185 aaPredicted RBP2.67□□□□□ -1.98
SMCHD1-204ENST00000581226 FGL1Q08830 312 aa2.67□□□□□ -1.98
SMCHD1-204ENST00000581226 CHIT1Q13231 466 aa2.67□□□□□ -1.98
SMCHD1-204ENST00000581226 FZD2Q14332 565 aa2.67□□□□□ -1.98
SMCHD1-204ENST00000581226 SGCAQ16586 387 aa2.67□□□□□ -1.98
SMCHD1-204ENST00000581226 GUCA2BQ16661 112 aa2.67□□□□□ -1.98
SMCHD1-204ENST00000581226 ZSCAN25Q6NSZ9 544 aa2.67□□□□□ -1.98
SMCHD1-204ENST00000581226 Q6ZPB1 254 aaPredicted RBP2.67□□□□□ -1.98
SMCHD1-204ENST00000581226 PCP2Q8IVA1 136 aa2.67□□□□□ -1.98
SMCHD1-204ENST00000581226 NUDCD3Q8IVD9 361 aa2.67□□□□□ -1.98
SMCHD1-204ENST00000581226 C12orf56Q8IXR9 622 aa2.67□□□□□ -1.98
SMCHD1-204ENST00000581226 SLC22A8Q8TCC7 542 aa2.67□□□□□ -1.98
SMCHD1-204ENST00000581226 RPRD1AQ96P16 312 aaPredicted RBP2.67□□□□□ -1.98
SMCHD1-204ENST00000581226 RIOK1Q9BRS2 568 aaKnown RBP2.67□□□□□ -1.98
SMCHD1-204ENST00000581226 PARD6BQ9BYG5 372 aa2.67□□□□□ -1.98
SMCHD1-204ENST00000581226 LY9Q9HBG7 655 aa2.67□□□□□ -1.98
SMCHD1-204ENST00000581226 SPATA7Q9P0W8 599 aa2.67□□□□□ -1.98
SMCHD1-204ENST00000581226 XCL2Q9UBD3 114 aa2.67□□□□□ -1.98
SMCHD1-204ENST00000581226 PRSS37A4D1T9 235 aa2.66□□□□□ -1.98
SMCHD1-204ENST00000581226 LRCOL1A6NCL2 159 aa2.66□□□□□ -1.98
SMCHD1-204ENST00000581226 H0YCG3 227 aa2.66□□□□□ -1.98
SMCHD1-204ENST00000581226 H3BNH8 94 aa2.66□□□□□ -1.98
SMCHD1-204ENST00000581226 ANGPTL7O43827 346 aa2.66□□□□□ -1.98
SMCHD1-204ENST00000581226 SNNO75324 88 aaPredicted RBP2.66□□□□□ -1.98
SMCHD1-204ENST00000581226 IGLV2-23P01705 113 aa2.66□□□□□ -1.98
SMCHD1-204ENST00000581226 CSF3P09919 207 aa2.66□□□□□ -1.98
SMCHD1-204ENST00000581226 OPRD1P41143 372 aa2.66□□□□□ -1.98
SMCHD1-204ENST00000581226 CCT3P49368 545 aaKnown RBP2.66□□□□□ -1.98
SMCHD1-204ENST00000581226 ZNF136P52737 540 aa2.66□□□□□ -1.98
SMCHD1-204ENST00000581226 CDK16Q00536 496 aa2.66□□□□□ -1.98
SMCHD1-204ENST00000581226 GPM6BQ13491 265 aa2.66□□□□□ -1.98
SMCHD1-204ENST00000581226 EXOC3L2Q2M3D2 409 aa2.66□□□□□ -1.98
SMCHD1-204ENST00000581226 COA6Q5JTJ3 125 aaKnown RBP2.66□□□□□ -1.98
SMCHD1-204ENST00000581226 PDZK1Q5T2W1 519 aa2.66□□□□□ -1.98
SMCHD1-204ENST00000581226 FAM71E1Q6IPT2 247 aa2.66□□□□□ -1.98
SMCHD1-204ENST00000581226 UTS2BQ765I0 119 aa2.66□□□□□ -1.98
SMCHD1-204ENST00000581226 CYB561D1Q8N8Q1 229 aa2.66□□□□□ -1.98
SMCHD1-204ENST00000581226 Q8N976 141 aa2.66□□□□□ -1.98
SMCHD1-204ENST00000581226 VN1R2Q8NFZ6 395 aa2.66□□□□□ -1.98
SMCHD1-204ENST00000581226 PYROXD1Q8WU10 500 aa2.66□□□□□ -1.98
SMCHD1-204ENST00000581226 ZNF606Q8WXB4 792 aa2.66□□□□□ -1.98
SMCHD1-204ENST00000581226 DNAJC19Q96DA6 116 aa2.66□□□□□ -1.98
SMCHD1-204ENST00000581226 COQ2Q96H96 371 aa2.66□□□□□ -1.98
SMCHD1-204ENST00000581226 TSNARE1Q96NA8 513 aa2.66□□□□□ -1.98
SMCHD1-204ENST00000581226 SLCO1B3Q9NPD5 702 aa2.66□□□□□ -1.98
SMCHD1-204ENST00000581226 SLIT3O75094 1523 aa2.65□□□□□ -1.99
SMCHD1-204ENST00000581226 TRAV26-1A0A087WT03 109 aa2.65□□□□□ -1.99
SMCHD1-204ENST00000581226 TCP11X1B4DZS4 312 aa2.65□□□□□ -1.99
SMCHD1-204ENST00000581226 CD5LO43866 347 aa2.65□□□□□ -1.99
SMCHD1-204ENST00000581226 CAPN1P07384 714 aa2.65□□□□□ -1.99
SMCHD1-204ENST00000581226 DBTP11182 482 aaKnown RBP2.65□□□□□ -1.99
SMCHD1-204ENST00000581226 ZNF823P16415 610 aa2.65□□□□□ -1.99
SMCHD1-204ENST00000581226 IGFBP3P17936 291 aaPredicted RBP2.65□□□□□ -1.99
SMCHD1-204ENST00000581226 SLC2A5P22732 501 aa2.65□□□□□ -1.99
SMCHD1-204ENST00000581226 GLRA2P23416 452 aa2.65□□□□□ -1.99
SMCHD1-204ENST00000581226 UBE2AP49459 152 aa2.65□□□□□ -1.99
SMCHD1-204ENST00000581226 GBX2P52951 348 aaPredicted RBP2.65□□□□□ -1.99
SMCHD1-204ENST00000581226 ATP1B3P54709 279 aa2.65□□□□□ -1.99
SMCHD1-204ENST00000581226 FGF8P55075 233 aaPredicted RBP2.65□□□□□ -1.99
SMCHD1-204ENST00000581226 ACTR1AP61163 376 aa2.65□□□□□ -1.99
SMCHD1-204ENST00000581226 HMGCS1Q01581 520 aa2.65□□□□□ -1.99
SMCHD1-204ENST00000581226 SPIBQ01892 262 aa2.65□□□□□ -1.99
SMCHD1-204ENST00000581226 IL24Q13007 206 aa2.65□□□□□ -1.99
SMCHD1-204ENST00000581226 ZBED5Q49AG3 693 aa2.65□□□□□ -1.99
SMCHD1-204ENST00000581226 LINC00483Q53H64 154 aa2.65□□□□□ -1.99
SMCHD1-204ENST00000581226 CNIH2Q6PI25 160 aa2.65□□□□□ -1.99
SMCHD1-204ENST00000581226 PIANPQ8IYJ0 282 aa2.65□□□□□ -1.99
SMCHD1-204ENST00000581226 ZADH2Q8N4Q0 377 aa2.65□□□□□ -1.99
SMCHD1-204ENST00000581226 ZNF561Q8N587 486 aa2.65□□□□□ -1.99
SMCHD1-204ENST00000581226 OR2L8Q8NGY9 312 aa2.65□□□□□ -1.99
SMCHD1-204ENST00000581226 ACTRT1Q8TDG2 376 aa2.65□□□□□ -1.99
SMCHD1-204ENST00000581226 SMARCD2Q92925 531 aa2.65□□□□□ -1.99
SMCHD1-204ENST00000581226 EXOSC8Q96B26 276 aaKnown RBP2.65□□□□□ -1.99
SMCHD1-204ENST00000581226 AURKBQ96GD4 344 aaPredicted RBP2.65□□□□□ -1.99
SMCHD1-204ENST00000581226 ZNF641Q96N77 438 aaPredicted RBP2.65□□□□□ -1.99
SMCHD1-204ENST00000581226 MTMR9Q96QG7 549 aa2.65□□□□□ -1.99
SMCHD1-204ENST00000581226 PSKH2Q96QS6 385 aa2.65□□□□□ -1.99
SMCHD1-204ENST00000581226 COPS8Q99627 209 aa2.65□□□□□ -1.99
SMCHD1-204ENST00000581226 MRPL47Q9HD33 250 aaKnown RBP2.65□□□□□ -1.99
SMCHD1-204ENST00000581226 TM9SF3Q9HD45 589 aa2.65□□□□□ -1.99
SMCHD1-204ENST00000581226 CTPS2Q9NRF8 586 aa2.65□□□□□ -1.99
SMCHD1-204ENST00000581226 CDH9Q9ULB4 789 aa2.65□□□□□ -1.99
SMCHD1-204ENST00000581226 PTCH1Q13635 1447 aa2.65□□□□□ -1.99
SMCHD1-204ENST00000581226 XKRYO14609 159 aa2.64□□□□□ -1.99
SMCHD1-204ENST00000581226 CXCL11O14625 94 aa2.64□□□□□ -1.99
SMCHD1-204ENST00000581226 ZNF30P17039 623 aa2.64□□□□□ -1.99
SMCHD1-204ENST00000581226 PMELP40967 661 aa2.64□□□□□ -1.99
SMCHD1-204ENST00000581226 GYG1P46976 350 aa2.64□□□□□ -1.99
SMCHD1-204ENST00000581226 ENPEPQ07075 957 aa2.64□□□□□ -1.99
SMCHD1-204ENST00000581226 SCRN3Q0VDG4 424 aa2.64□□□□□ -1.99
SMCHD1-204ENST00000581226 MAJINQ3KP22 176 aa2.64□□□□□ -1.99
SMCHD1-204ENST00000581226 ABHD12BQ7Z5M8 362 aaPredicted RBP2.64□□□□□ -1.99
SMCHD1-204ENST00000581226 DHDDSQ86SQ9 333 aa2.64□□□□□ -1.99
SMCHD1-204ENST00000581226 TRIM69Q86WT6 500 aa2.64□□□□□ -1.99
SMCHD1-204ENST00000581226 OR10G2Q8NGC3 310 aa2.64□□□□□ -1.99
SMCHD1-204ENST00000581226 ZFP90Q8TF47 636 aa2.64□□□□□ -1.99
SMCHD1-204ENST00000581226 SCFD1Q8WVM8 642 aa2.64□□□□□ -1.99
SMCHD1-204ENST00000581226 TBRG4Q969Z0 631 aaKnown RBP eCLIP2.64□□□□□ -1.99
SMCHD1-204ENST00000581226 C10orf35Q96D05 121 aa2.64□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms