RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 CASQ1P31415 396 aa6.23□□□□□ -1.41
VPS4A-203ENST00000564399 CHI3L1P36222 383 aaPredicted RBP6.23□□□□□ -1.41
VPS4A-203ENST00000564399 GIPRP48546 466 aa6.23□□□□□ -1.41
VPS4A-203ENST00000564399 CCT5P48643 541 aa6.23□□□□□ -1.41
VPS4A-203ENST00000564399 KLF3P57682 345 aaPredicted RBP6.23□□□□□ -1.41
VPS4A-203ENST00000564399 RAB1AP62820 205 aa6.23□□□□□ -1.41
VPS4A-203ENST00000564399 RAB39AQ14964 217 aa6.23□□□□□ -1.41
VPS4A-203ENST00000564399 SLC9A3R2Q15599 337 aa6.23□□□□□ -1.41
VPS4A-203ENST00000564399 FXNQ16595 210 aa6.23□□□□□ -1.41
VPS4A-203ENST00000564399 TSTQ16762 297 aaKnown RBP6.23□□□□□ -1.41
VPS4A-203ENST00000564399 PCGF3Q3KNV8 242 aa6.23□□□□□ -1.41
VPS4A-203ENST00000564399 FBLN7Q53RD9 439 aa6.23□□□□□ -1.41
VPS4A-203ENST00000564399 C6orf136Q5SQH8 315 aa6.23□□□□□ -1.41
VPS4A-203ENST00000564399 MRPL2Q5T653 305 aaKnown RBP6.23□□□□□ -1.41
VPS4A-203ENST00000564399 CARD17Q5XLA6 110 aa6.23□□□□□ -1.41
VPS4A-203ENST00000564399 ATG16L1Q676U5 607 aa6.23□□□□□ -1.41
VPS4A-203ENST00000564399 WBP2NLQ6ICG8 309 aa6.23□□□□□ -1.41
VPS4A-203ENST00000564399 C16orf87Q6PH81 154 aa6.23□□□□□ -1.41
VPS4A-203ENST00000564399 BRICD5Q6PL45 260 aa6.23□□□□□ -1.41
VPS4A-203ENST00000564399 USP51Q70EK9 711 aa6.23□□□□□ -1.41
VPS4A-203ENST00000564399 RIMKLAQ8IXN7 391 aa6.23□□□□□ -1.41
VPS4A-203ENST00000564399 ZNF440Q8IYI8 595 aa6.23□□□□□ -1.41
VPS4A-203ENST00000564399 KIR3DL3Q8N743 410 aa6.23□□□□□ -1.41
VPS4A-203ENST00000564399 ANKFN1Q8N957 763 aa6.23□□□□□ -1.41
VPS4A-203ENST00000564399 AGR3Q8TD06 166 aa6.23□□□□□ -1.41
VPS4A-203ENST00000564399 CCL17Q92583 94 aa6.23□□□□□ -1.41
VPS4A-203ENST00000564399 ZNF48Q96MX3 618 aaPredicted RBP6.23□□□□□ -1.41
VPS4A-203ENST00000564399 OXGR1Q96P68 337 aa6.23□□□□□ -1.41
VPS4A-203ENST00000564399 GATA5Q9BWX5 397 aaPredicted RBP6.23□□□□□ -1.41
VPS4A-203ENST00000564399 OR51B6Q9H340 312 aa6.23□□□□□ -1.41
VPS4A-203ENST00000564399 BEX1Q9HBH7 125 aa6.23□□□□□ -1.41
VPS4A-203ENST00000564399 MARCOQ9UEW3 520 aaPredicted RBP6.23□□□□□ -1.41
VPS4A-203ENST00000564399 SLC7A8Q9UHI5 535 aa6.23□□□□□ -1.41
VPS4A-203ENST00000564399 PURGQ9UJV8 347 aaKnown RBP6.23□□□□□ -1.41
VPS4A-203ENST00000564399 POFUT2Q9Y2G5 429 aa6.23□□□□□ -1.41
VPS4A-203ENST00000564399 MMP24Q9Y5R2 645 aa6.23□□□□□ -1.41
VPS4A-203ENST00000564399 CACNG2Q9Y698 323 aa6.23□□□□□ -1.41
VPS4A-203ENST00000564399 DSPPQ9NZW4 1301 aa6.23□□□□□ -1.41
VPS4A-203ENST00000564399 A0A096LPI6 279 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 SLC22A23A1A5C7 686 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 PRAMEF27A3QJZ7 478 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 CLDN34H7C241 214 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 RNASET2O00584 256 aaKnown RBP6.22□□□□□ -1.41
VPS4A-203ENST00000564399 TIMM23O14925 209 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 FOXH1O75593 365 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 MT-ND5P03915 603 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 CRYBA1P05813 215 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 LCKP06239 509 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 DBIP07108 87 aaKnown RBP6.22□□□□□ -1.41
VPS4A-203ENST00000564399 CHRNGP07510 517 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 FGF4P08620 206 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 FAM157BP0CG42 384 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 G6PDP11413 515 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 B4GALT1P15291 398 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 RPS5P46782 204 aaKnown RBP6.22□□□□□ -1.41
VPS4A-203ENST00000564399 MTNR1AP48039 350 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 AQP5P55064 265 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 CHI3L2Q15782 390 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 SYPL1Q16563 259 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 UGT3A2Q3SY77 523 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 KLF17Q5JT82 389 aaPredicted RBP6.22□□□□□ -1.41
VPS4A-203ENST00000564399 PHYHD1Q5SRE7 291 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 ANKRD46Q86W74 232 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 C10orf107Q8IVU9 208 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 PEX5LQ8IYB4 626 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 ICA1LQ8NDH6 482 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 DEFB108BQ8NET1 73 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 VPS37AQ8NEZ2 397 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 MFSD8Q8NHS3 518 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 SYNPRQ8TBG9 265 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 STK35Q8TDR2 534 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 WFDC12Q8WWY7 111 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 C11orf40Q8WZ69 217 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 TUBGCP3Q96CW5 907 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 ELMOD3Q96FG2 381 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 C3orf30Q96M34 536 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 ZNF75AQ96N20 296 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 TRNT1Q96Q11 434 aaKnown RBP6.22□□□□□ -1.41
VPS4A-203ENST00000564399 TSPAN32Q96QS1 320 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 OR2M2Q96R28 347 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 MRI1Q9BV20 369 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 SLC38A1Q9H2H9 487 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 DENND2DQ9H6A0 471 aaPredicted RBP6.22□□□□□ -1.41
VPS4A-203ENST00000564399 MTHFD2LQ9H903 347 aaPredicted RBP6.22□□□□□ -1.41
VPS4A-203ENST00000564399 SAP30LQ9HAJ7 183 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 B3GAT2Q9NPZ5 323 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 MMP26Q9NRE1 261 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 RLIMQ9NVW2 624 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 SLCO1C1Q9NYB5 712 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 NKIRAS2Q9NYR9 191 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 PSMC3IPQ9P2W1 217 aaPredicted RBP6.22□□□□□ -1.41
VPS4A-203ENST00000564399 LEF1Q9UJU2 399 aaPredicted RBP6.22□□□□□ -1.41
VPS4A-203ENST00000564399 FBXL3Q9UKT7 428 aa6.22□□□□□ -1.41
VPS4A-203ENST00000564399 PPIAL4EA0A075B759 164 aa6.21□□□□□ -1.42
VPS4A-203ENST00000564399 IGHV3OR16-10A0A075B7F0 116 aa6.21□□□□□ -1.42
VPS4A-203ENST00000564399 PPIAL4CA0A0B4J2A2 164 aa6.21□□□□□ -1.42
VPS4A-203ENST00000564399 PRSS51A0A1B0GVH4 220 aa6.21□□□□□ -1.42
VPS4A-203ENST00000564399 FTCDNL1E5RQL4 147 aa6.21□□□□□ -1.42
VPS4A-203ENST00000564399 PPIAL4DF5H284 164 aa6.21□□□□□ -1.42
VPS4A-203ENST00000564399 HMGN4O00479 90 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms