RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 ZNF517Q6ZMY9 492 aaPredicted RBP4.59□□□□□ -1.67
VPS35-205ENST00000563984 SH2D5Q6ZV89 423 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 CYS1Q717R9 158 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 TRMT1LQ7Z2T5 733 aaKnown RBP4.59□□□□□ -1.67
VPS35-205ENST00000563984 PIWIL4Q7Z3Z4 852 aaKnown RBP4.59□□□□□ -1.67
VPS35-205ENST00000563984 UNC93AQ86WB7 457 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 LGI3Q8N145 548 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 HORMAD2Q8N7B1 307 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 DMBX1Q8NFW5 382 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 OR10K1Q8NGX5 313 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 WDR36Q8NI36 951 aaKnown RBP4.59□□□□□ -1.67
VPS35-205ENST00000563984 FAM45AQ8TCE6 357 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 ZFAND1Q8TCF1 268 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 SLC2A12Q8TD20 617 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 ABHD3Q8WU67 409 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 PTPMT1Q8WUK0 201 aaPredicted RBP4.59□□□□□ -1.67
VPS35-205ENST00000563984 EVPLQ92817 2033 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 RBPMSQ93062 196 aaKnown RBP4.59□□□□□ -1.67
VPS35-205ENST00000563984 BPIFA2Q96DR5 249 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 CPNE2Q96FN4 548 aaPredicted RBP4.59□□□□□ -1.67
VPS35-205ENST00000563984 RAB40CQ96S21 281 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 KRTAP4-4Q9BYR3 166 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 SIRPDQ9H106 197 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 SDCBP2Q9H190 292 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 CLMPQ9H6B4 373 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 REEP4Q9H6H4 257 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 FSCN3Q9NQT6 498 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 NECAP2Q9NVZ3 263 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 MED11Q9P086 117 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 LRWD1Q9UFC0 647 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 STUB1Q9UNE7 303 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 ING4Q9UNL4 249 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 FBXO7Q9Y3I1 522 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 HSPB11Q9Y547 144 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 AP4S1Q9Y587 144 aa4.59□□□□□ -1.67
VPS35-205ENST00000563984 SETD1AO15047 1707 aaKnown RBP4.58□□□□□ -1.68
VPS35-205ENST00000563984 FANCAO15360 1455 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 PLEKHH2Q8IVE3 1493 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 NRXN1Q9ULB1 1477 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 TNFSF12-TNFSF13A0A0A6YY99 330 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 A0A1W2PQF6 199 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 VSTM2BA6NLU5 285 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 CLDN25C9JDP6 229 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 H0Y980 276 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 M0QXV9 152 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 UBDO15205 165 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 PCDH7O60245 1069 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 LRP3O75074 770 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 AP2A2O94973 939 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 UTS2O95399 124 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 ACTL6AO96019 429 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 PDYNP01213 254 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 TFP02787 698 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 SERPINE2P07093 398 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 OR8U9P0C7N5 309 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 IL7P13232 177 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 PAX1P15863 534 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 EFNA1P20827 205 aaPredicted RBP4.58□□□□□ -1.68
VPS35-205ENST00000563984 C4BPBP20851 252 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 LHCGRP22888 699 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 CD82P27701 267 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 S100GP29377 79 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 RBMS1P29558 406 aaKnown RBP4.58□□□□□ -1.68
VPS35-205ENST00000563984 CALCRP30988 508 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 CPOXP36551 454 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 UQCRFS1P47985 274 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 CSNK1A1P48729 337 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 GNG11P61952 73 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 PRPSAP1Q14558 356 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 ABRAXAS2Q15018 415 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 ADPRMQ3LIE5 342 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 TMEM176BQ3YBM2 270 aaPredicted RBP4.58□□□□□ -1.68
VPS35-205ENST00000563984 ACSM3Q53FZ2 586 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 ACSBG2Q5FVE4 666 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 CLLU1Q5K131 121 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 ATAD3CQ5T2N8 411 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 ANKRD22Q5VYY1 191 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 ZNF774Q6NX45 483 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 ZNF474Q6S9Z5 364 aaPredicted RBP4.58□□□□□ -1.68
VPS35-205ENST00000563984 SCIMPQ6UWF3 145 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 BAIAP2L2Q6UXY1 529 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 RAD9BQ6WBX8 426 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 QSOX2Q6ZRP7 698 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 FCRLAQ7L513 359 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 SSX7Q7RTT5 188 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 TCF24Q7RTU0 167 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 GALNT10Q86SR1 603 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 ZNF683Q8IZ20 524 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 ZNF34Q8IZ26 560 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 CMTM8Q8IZV2 173 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 CPXM2Q8N436 756 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 TMEM251Q8N6I4 163 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 PACRGLQ8N7B6 248 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 ZNF557Q8N988 423 aaPredicted RBP4.58□□□□□ -1.68
VPS35-205ENST00000563984 OR5L2Q8NGL0 311 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 OR9G4Q8NGQ1 327 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 TERB2Q8NHR7 220 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 ASB17Q8WXJ9 295 aa4.58□□□□□ -1.68
VPS35-205ENST00000563984 RGP1Q92546 391 aaPredicted RBP4.58□□□□□ -1.68
VPS35-205ENST00000563984 NPIPB3Q92617 1050 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms