RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 MMP12P39900 470 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 ID1P41134 155 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 SLC7A2P52569 658 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 XGP55808 180 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 RAG2P55895 527 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 SLC8A3P57103 927 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 ACTR3P61158 418 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 UBE2IP63279 158 aaKnown RBP3.2□□□□□ -1.9
LIMA1-208ENST00000551691 GUCY2DQ02846 1103 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 MFGE8Q08431 387 aaPredicted RBP3.2□□□□□ -1.9
LIMA1-208ENST00000551691 PJVKQ0ZLH3 352 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 BST2Q10589 180 aaKnown RBP3.2□□□□□ -1.9
LIMA1-208ENST00000551691 FUT7Q11130 342 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 SRSF9Q13242 221 aaKnown RBP eCLIP3.2□□□□□ -1.9
LIMA1-208ENST00000551691 SELPLGQ14242 412 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 CAPRIN1Q14444 709 aaKnown RBP3.2□□□□□ -1.9
LIMA1-208ENST00000551691 EFTUD2Q15029 972 aaKnown RBP eCLIP3.2□□□□□ -1.9
LIMA1-208ENST00000551691 P2RY6Q15077 328 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 HAGHQ16775 308 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 ECSCRQ19T08 205 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 EXOC3L2Q2M3D2 409 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 KIAA1644Q3SXP7 199 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 DMKNQ6E0U4 476 aaPredicted RBP3.2□□□□□ -1.9
LIMA1-208ENST00000551691 CCDC73Q6ZRK6 1079 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 SHISA6Q6ZSJ9 500 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 C16orf82Q7Z2V1 217 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 HSD11B1LQ7Z5J1 315 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 TSEN54Q7Z6J9 526 aaKnown RBP3.2□□□□□ -1.9
LIMA1-208ENST00000551691 TRPT1Q86TN4 253 aaKnown RBP3.2□□□□□ -1.9
LIMA1-208ENST00000551691 GRAMD2AQ8IUY3 354 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 DND1Q8IYX4 353 aaKnown RBP3.2□□□□□ -1.9
LIMA1-208ENST00000551691 GVQW1Q8N7I0 195 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 DCAF4L2Q8NA75 395 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 RELL2Q8NC24 303 aaPredicted RBP3.2□□□□□ -1.9
LIMA1-208ENST00000551691 BBOF1Q8ND07 529 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 STXBP6Q8NFX7 210 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 OR2AP1Q8NGE2 309 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 OR9Q2Q8NGE9 314 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 OR10G8Q8NGN5 311 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 OR5M9Q8NGP3 310 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 SMAP2Q8WU79 429 aaPredicted RBP3.2□□□□□ -1.9
LIMA1-208ENST00000551691 NUDCD2Q8WVJ2 157 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 LIPHQ8WWY8 451 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 SDSLQ96GA7 329 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 ZNF479Q96JC4 524 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 C2orf48Q96LS8 159 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 C10orf90Q96M02 699 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 SMIM14Q96QK8 99 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 OR2M4Q96R27 311 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 SECISBP2Q96T21 854 aaKnown RBP3.2□□□□□ -1.9
LIMA1-208ENST00000551691 CCDC77Q9BR77 488 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 DGCR6LQ9BY27 220 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 HES7Q9BYE0 225 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 FAM192AQ9GZU8 254 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 PLEKHA3Q9HB20 300 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 CYP3A43Q9HB55 503 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 MAN2C1Q9NTJ4 1040 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 KLRF1Q9NZS2 232 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 GHRLQ9UBU3 117 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 KLK11Q9UBX7 282 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 CHRNA9Q9UGM1 479 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 CD84Q9UIB8 345 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 PTBP2Q9UKA9 531 aaKnown RBP3.2□□□□□ -1.9
LIMA1-208ENST00000551691 SLC17A4Q9Y2C5 497 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 AP4B1Q9Y6B7 739 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 LOC105371242A0A075B767 164 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 PPIAL4CA0A0B4J2A2 164 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 LOC390937A0A1W2PQ73 354 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 XKRY2A2RUG3 117 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 OR5H15A6NDH6 313 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 OR52A4PA6NMU1 304 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 ZNF195O14628 629 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 CASKO14936 926 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 TOX3O15405 576 aaPredicted RBP3.19□□□□□ -1.9
LIMA1-208ENST00000551691 ZNF749O43361 778 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 HCRTR1O43613 425 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 DNAJB6O75190 326 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 ERLIN1O75477 346 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 SERPINA3P01011 423 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 GPIP06744 558 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 IVLP07476 585 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 FRMD6-AS1P0C7T7 363 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 FAM157CP0CG43 387 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 PPIAL4GP0DN37 164 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 ABOP16442 354 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 ZNF30P17039 623 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 PAX7P23759 505 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 CASP1P29466 404 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 CYLC1P35663 651 aaPredicted RBP3.19□□□□□ -1.9
LIMA1-208ENST00000551691 SOX3P41225 446 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 PAX9P55771 341 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 NUP107P57740 925 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 SNRPD1P62314 119 aaKnown RBP3.19□□□□□ -1.9
LIMA1-208ENST00000551691 DHODHQ02127 395 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 GNA12Q03113 381 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 ACY1Q03154 408 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 EIF2B1Q14232 305 aaKnown RBP3.19□□□□□ -1.9
LIMA1-208ENST00000551691 MESDQ14696 234 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 CYTH1Q15438 398 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 TAB1Q15750 504 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms