RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 TM4SF19Q96DZ7 209 aa2.84□□□□□ -1.95
VPS29-205ENST00000548539 MED8Q96G25 268 aa2.84□□□□□ -1.95
VPS29-205ENST00000548539 FCRL1Q96LA6 429 aa2.84□□□□□ -1.95
VPS29-205ENST00000548539 MBOAT4Q96T53 435 aa2.84□□□□□ -1.95
VPS29-205ENST00000548539 SORT1Q99523 831 aa2.84□□□□□ -1.95
VPS29-205ENST00000548539 PLIN2Q99541 437 aa2.84□□□□□ -1.95
VPS29-205ENST00000548539 TMEM246Q9BRR3 403 aa2.84□□□□□ -1.95
VPS29-205ENST00000548539 INPP5EQ9NRR6 644 aa2.84□□□□□ -1.95
VPS29-205ENST00000548539 CALYQ9NYX4 217 aa2.84□□□□□ -1.95
VPS29-205ENST00000548539 NEUROG3Q9Y4Z2 214 aa2.84□□□□□ -1.95
VPS29-205ENST00000548539 SLC25A15Q9Y619 301 aa2.84□□□□□ -1.95
VPS29-205ENST00000548539 OR2AG2A6NM03 316 aa2.83□□□□□ -1.96
VPS29-205ENST00000548539 GJE1A6NN92 205 aa2.83□□□□□ -1.96
VPS29-205ENST00000548539 FAM189A1O60320 539 aa2.83□□□□□ -1.96
VPS29-205ENST00000548539 MOSP00540 346 aa2.83□□□□□ -1.96
VPS29-205ENST00000548539 IGLV1-47P01700 117 aa2.83□□□□□ -1.96
VPS29-205ENST00000548539 ALDOBP05062 364 aa2.83□□□□□ -1.96
VPS29-205ENST00000548539 TPM2P07951 284 aa2.83□□□□□ -1.96
VPS29-205ENST00000548539 PABPC4LP0CB38 370 aaKnown RBP2.83□□□□□ -1.96
VPS29-205ENST00000548539 PRDX3P30048 256 aaKnown RBP2.83□□□□□ -1.96
VPS29-205ENST00000548539 HSD17B2P37059 387 aa2.83□□□□□ -1.96
VPS29-205ENST00000548539 FDFT1P37268 417 aa2.83□□□□□ -1.96
VPS29-205ENST00000548539 CTRLP40313 264 aa2.83□□□□□ -1.96
VPS29-205ENST00000548539 PRMT2P55345 433 aa2.83□□□□□ -1.96
VPS29-205ENST00000548539 NUP107P57740 925 aa2.83□□□□□ -1.96
VPS29-205ENST00000548539 IRX3P78415 501 aaPredicted RBP2.83□□□□□ -1.96
VPS29-205ENST00000548539 TGM3Q08188 693 aa2.83□□□□□ -1.96
VPS29-205ENST00000548539 DAZ2Q13117 558 aaKnown RBP2.83□□□□□ -1.96
VPS29-205ENST00000548539 SRSF5Q13243 272 aaKnown RBP2.83□□□□□ -1.96
VPS29-205ENST00000548539 PPP1R7Q15435 360 aa2.83□□□□□ -1.96
VPS29-205ENST00000548539 ARMC12Q5T9G4 340 aa2.83□□□□□ -1.96
VPS29-205ENST00000548539 LCN12Q6JVE5 192 aa2.83□□□□□ -1.96
VPS29-205ENST00000548539 NIPA1Q7RTP0 329 aa2.83□□□□□ -1.96
VPS29-205ENST00000548539 SUMF2Q8NBJ7 301 aa2.83□□□□□ -1.96
VPS29-205ENST00000548539 RAB3IL1Q8TBN0 382 aa2.83□□□□□ -1.96
VPS29-205ENST00000548539 SLC22A8Q8TCC7 542 aa2.83□□□□□ -1.96
VPS29-205ENST00000548539 ACOT11Q8WXI4 607 aaPredicted RBP2.83□□□□□ -1.96
VPS29-205ENST00000548539 NDRG1Q92597 394 aaKnown RBP2.83□□□□□ -1.96
VPS29-205ENST00000548539 CENPKQ9BS16 269 aa2.83□□□□□ -1.96
VPS29-205ENST00000548539 FAM192AQ9GZU8 254 aa2.83□□□□□ -1.96
VPS29-205ENST00000548539 SRMSQ9H3Y6 488 aa2.83□□□□□ -1.96
VPS29-205ENST00000548539 IL26Q9NPH9 171 aa2.83□□□□□ -1.96
VPS29-205ENST00000548539 DAZ3Q9NR90 486 aaKnown RBP2.83□□□□□ -1.96
VPS29-205ENST00000548539 CCL28Q9NRJ3 127 aa2.83□□□□□ -1.96
VPS29-205ENST00000548539 CLCF1Q9UBD9 225 aa2.83□□□□□ -1.96
VPS29-205ENST00000548539 CELA1Q9UNI1 258 aa2.83□□□□□ -1.96
VPS29-205ENST00000548539 RAI1Q7Z5J4 1906 aaPredicted RBP2.83□□□□□ -1.96
VPS29-205ENST00000548539 CCDC182A6NF36 153 aa2.82□□□□□ -1.96
VPS29-205ENST00000548539 SGK1O00141 431 aa2.82□□□□□ -1.96
VPS29-205ENST00000548539 CCL21O00585 134 aa2.82□□□□□ -1.96
VPS29-205ENST00000548539 LSM1O15116 133 aaKnown RBP2.82□□□□□ -1.96
VPS29-205ENST00000548539 ZNF861PO60384 105 aa2.82□□□□□ -1.96
VPS29-205ENST00000548539 INSP01308 110 aa2.82□□□□□ -1.96
VPS29-205ENST00000548539 IGHV2-5P01817 119 aa2.82□□□□□ -1.96
VPS29-205ENST00000548539 TOP1P11387 765 aaKnown RBP2.82□□□□□ -1.96
VPS29-205ENST00000548539 CMA1P23946 247 aa2.82□□□□□ -1.96
VPS29-205ENST00000548539 IFNA8P32881 189 aa2.82□□□□□ -1.96
VPS29-205ENST00000548539 RORAP35398 523 aa2.82□□□□□ -1.96
VPS29-205ENST00000548539 VHLP40337 213 aa2.82□□□□□ -1.96
VPS29-205ENST00000548539 YAP1P46937 504 aaKnown RBP2.82□□□□□ -1.96
VPS29-205ENST00000548539 SH3BGRP55822 239 aaPredicted RBP2.82□□□□□ -1.96
VPS29-205ENST00000548539 ERVK-25P63136 954 aa2.82□□□□□ -1.96
VPS29-205ENST00000548539 KIAA0087Q14695 138 aa2.82□□□□□ -1.96
VPS29-205ENST00000548539 CASC10Q5T4H9 136 aa2.82□□□□□ -1.96
VPS29-205ENST00000548539 C6orf89Q6UWU4 347 aa2.82□□□□□ -1.96
VPS29-205ENST00000548539 ZNF836Q6ZNA1 936 aa2.82□□□□□ -1.96
VPS29-205ENST00000548539 ACP7Q6ZNF0 438 aa2.82□□□□□ -1.96
VPS29-205ENST00000548539 PLPPR1Q8TBJ4 325 aa2.82□□□□□ -1.96
VPS29-205ENST00000548539 ACER1Q8TDN7 264 aa2.82□□□□□ -1.96
VPS29-205ENST00000548539 FGF14Q92915 247 aa2.82□□□□□ -1.96
VPS29-205ENST00000548539 RARRES2Q99969 163 aa2.82□□□□□ -1.96
VPS29-205ENST00000548539 RIOK2Q9BVS4 552 aaKnown RBP2.82□□□□□ -1.96
VPS29-205ENST00000548539 MFFQ9GZY8 342 aa2.82□□□□□ -1.96
VPS29-205ENST00000548539 NXF3Q9H4D5 531 aaKnown RBP2.82□□□□□ -1.96
VPS29-205ENST00000548539 CLMPQ9H6B4 373 aa2.82□□□□□ -1.96
VPS29-205ENST00000548539 ANKRA2Q9H9E1 313 aa2.82□□□□□ -1.96
VPS29-205ENST00000548539 NANOGQ9H9S0 305 aa2.82□□□□□ -1.96
VPS29-205ENST00000548539 MRPL47Q9HD33 250 aaKnown RBP2.82□□□□□ -1.96
VPS29-205ENST00000548539 ABCB10Q9NRK6 738 aa2.82□□□□□ -1.96
VPS29-205ENST00000548539 STARD10Q9Y365 291 aa2.82□□□□□ -1.96
VPS29-205ENST00000548539 N6AMT1Q9Y5N5 214 aa2.82□□□□□ -1.96
VPS29-205ENST00000548539 CDHR2Q9BYE9 1310 aa2.82□□□□□ -1.96
VPS29-205ENST00000548539 ARHGAP23Q9P227 1491 aa2.82□□□□□ -1.96
VPS29-205ENST00000548539 ZNF646O15015 1829 aaPredicted RBP2.82□□□□□ -1.96
VPS29-205ENST00000548539 C12orf71A8MTZ7 269 aa2.81□□□□□ -1.96
VPS29-205ENST00000548539 A8MU10 97 aa2.81□□□□□ -1.96
VPS29-205ENST00000548539 DFNA5O60443 496 aa2.81□□□□□ -1.96
VPS29-205ENST00000548539 WBP4O75554 376 aaKnown RBP2.81□□□□□ -1.96
VPS29-205ENST00000548539 FGGP02679 453 aa2.81□□□□□ -1.96
VPS29-205ENST00000548539 FGF1P05230 155 aa2.81□□□□□ -1.96
VPS29-205ENST00000548539 C2P06681 752 aa2.81□□□□□ -1.96
VPS29-205ENST00000548539 CRYGBP07316 175 aa2.81□□□□□ -1.96
VPS29-205ENST00000548539 TROVE2P10155 538 aaKnown RBP eCLIP2.81□□□□□ -1.96
VPS29-205ENST00000548539 TCN1P20061 433 aaPredicted RBP2.81□□□□□ -1.96
VPS29-205ENST00000548539 CCNA1P78396 465 aa2.81□□□□□ -1.96
VPS29-205ENST00000548539 GPNMBQ14956 572 aa2.81□□□□□ -1.96
VPS29-205ENST00000548539 RCN1Q15293 331 aa2.81□□□□□ -1.96
VPS29-205ENST00000548539 XKR7Q5GH72 579 aa2.81□□□□□ -1.96
VPS29-205ENST00000548539 SLC25A48Q6ZT89 311 aaKnown RBP2.81□□□□□ -1.96
VPS29-205ENST00000548539 TTC5Q8N0Z6 440 aa2.81□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms