RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 PNLIPRP2P54317 469 aa16.8■□□□□ 0.28
PRPF40B-208ENST00000548436 SHBQ15464 509 aa16.8■□□□□ 0.28
PRPF40B-208ENST00000548436 PTCRAQ6ISU1 281 aaPredicted RBP16.8■□□□□ 0.28
PRPF40B-208ENST00000548436 WDR74Q6RFH5 385 aaPredicted RBP16.8■□□□□ 0.28
PRPF40B-208ENST00000548436 ESPNLQ6ZVH7 1005 aa16.8■□□□□ 0.28
PRPF40B-208ENST00000548436 CDC20BQ86Y33 519 aa16.8■□□□□ 0.28
PRPF40B-208ENST00000548436 CEP76Q8TAP6 659 aa16.8■□□□□ 0.28
PRPF40B-208ENST00000548436 MAP6Q96JE9 813 aa16.8■□□□□ 0.28
PRPF40B-208ENST00000548436 SLC22A11Q9NSA0 550 aa16.8■□□□□ 0.28
PRPF40B-208ENST00000548436 EXPH5Q8NEV8 1989 aa16.8■□□□□ 0.28
PRPF40B-208ENST00000548436 IGHV3-20A0A0C4DH32 117 aa16.79■□□□□ 0.28
PRPF40B-208ENST00000548436 SCO2O43819 266 aa16.79■□□□□ 0.28
PRPF40B-208ENST00000548436 SLC43A1O75387 559 aa16.79■□□□□ 0.28
PRPF40B-208ENST00000548436 GPANK1O95872 356 aa16.79■□□□□ 0.28
PRPF40B-208ENST00000548436 SLC36A2Q495M3 483 aa16.79■□□□□ 0.28
PRPF40B-208ENST00000548436 PRR23CQ6ZRP0 262 aa16.79■□□□□ 0.28
PRPF40B-208ENST00000548436 COX15Q7KZN9 410 aa16.79■□□□□ 0.28
PRPF40B-208ENST00000548436 TMPRSS9Q7Z410 1059 aa16.79■□□□□ 0.28
PRPF40B-208ENST00000548436 HAVCR2Q8TDQ0 301 aa16.79■□□□□ 0.28
PRPF40B-208ENST00000548436 PHYHIPQ92561 330 aa16.79■□□□□ 0.28
PRPF40B-208ENST00000548436 RNF170Q96K19 258 aa16.79■□□□□ 0.28
PRPF40B-208ENST00000548436 DERL3Q96Q80 235 aa16.79■□□□□ 0.28
PRPF40B-208ENST00000548436 SLC25A18Q9H1K4 315 aa16.79■□□□□ 0.28
PRPF40B-208ENST00000548436 TSPAN10Q9H1Z9 355 aaPredicted RBP16.79■□□□□ 0.28
PRPF40B-208ENST00000548436 ABCG5Q9H222 651 aa16.79■□□□□ 0.28
PRPF40B-208ENST00000548436 CPAMD8Q8IZJ3 1885 aa16.79■□□□□ 0.28
PRPF40B-208ENST00000548436 TRAV36DV7A0A075B6V5 113 aa16.79■□□□□ 0.28
PRPF40B-208ENST00000548436 K7ESF4 209 aa16.79■□□□□ 0.28
PRPF40B-208ENST00000548436 CDC40O60508 579 aaKnown RBP eCLIP16.79■□□□□ 0.28
PRPF40B-208ENST00000548436 PGCP20142 388 aa16.79■□□□□ 0.28
PRPF40B-208ENST00000548436 BTCP35070 178 aa16.79■□□□□ 0.28
PRPF40B-208ENST00000548436 HOXD12P35452 270 aa16.79■□□□□ 0.28
PRPF40B-208ENST00000548436 RPS27P42677 84 aaKnown RBP16.79■□□□□ 0.28
PRPF40B-208ENST00000548436 PLA1AQ53H76 456 aa16.79■□□□□ 0.28
PRPF40B-208ENST00000548436 YIF1BQ5BJH7 314 aa16.79■□□□□ 0.28
PRPF40B-208ENST00000548436 LIPNQ5VXI9 398 aa16.79■□□□□ 0.28
PRPF40B-208ENST00000548436 SLC6A19Q695T7 634 aa16.79■□□□□ 0.28
PRPF40B-208ENST00000548436 Q7L0L9 218 aa16.79■□□□□ 0.28
PRPF40B-208ENST00000548436 KMT5CQ86Y97 462 aa16.79■□□□□ 0.28
PRPF40B-208ENST00000548436 OR2T4Q8NH00 348 aa16.79■□□□□ 0.28
PRPF40B-208ENST00000548436 LGALS14Q8TCE9 139 aa16.79■□□□□ 0.28
PRPF40B-208ENST00000548436 MESP1Q9BRJ9 268 aa16.79■□□□□ 0.28
PRPF40B-208ENST00000548436 PTDSS2Q9BVG9 487 aa16.79■□□□□ 0.28
PRPF40B-208ENST00000548436 DUSP15Q9H1R2 295 aaPredicted RBP16.79■□□□□ 0.28
PRPF40B-208ENST00000548436 SYT4Q9H2B2 425 aa16.79■□□□□ 0.28
PRPF40B-208ENST00000548436 ZNF768Q9H5H4 540 aaKnown RBP16.79■□□□□ 0.28
PRPF40B-208ENST00000548436 WDR76Q9H967 626 aa16.79■□□□□ 0.28
PRPF40B-208ENST00000548436 SPATA2Q9UM82 520 aa16.79■□□□□ 0.28
PRPF40B-208ENST00000548436 ASCC3Q8N3C0 2202 aaKnown RBP16.78■□□□□ 0.28
PRPF40B-208ENST00000548436 C11orf98E9PRG8 122 aa16.78■□□□□ 0.28
PRPF40B-208ENST00000548436 FADS1O60427 444 aa16.78■□□□□ 0.28
PRPF40B-208ENST00000548436 AKR7A3O95154 331 aa16.78■□□□□ 0.28
PRPF40B-208ENST00000548436 ABHD16AO95870 558 aa16.78■□□□□ 0.28
PRPF40B-208ENST00000548436 GP1BBP13224 206 aa16.78■□□□□ 0.28
PRPF40B-208ENST00000548436 EVI2BP34910 448 aa16.78■□□□□ 0.28
PRPF40B-208ENST00000548436 EEF1A1P5Q5VTE0 462 aa16.78■□□□□ 0.28
PRPF40B-208ENST00000548436 GPR139Q6DWJ6 353 aa16.78■□□□□ 0.28
PRPF40B-208ENST00000548436 KCTD20Q7Z5Y7 419 aa16.78■□□□□ 0.28
PRPF40B-208ENST00000548436 PM20D2Q8IYS1 436 aa16.78■□□□□ 0.28
PRPF40B-208ENST00000548436 YIPF7Q8N8F6 280 aa16.78■□□□□ 0.28
PRPF40B-208ENST00000548436 PLPP5Q8NEB5 264 aa16.78■□□□□ 0.28
PRPF40B-208ENST00000548436 C7orf57Q8NEG2 295 aa16.78■□□□□ 0.28
PRPF40B-208ENST00000548436 YIPF5Q969M3 257 aa16.78■□□□□ 0.28
PRPF40B-208ENST00000548436 CCDC74AQ96AQ1 378 aa16.78■□□□□ 0.28
PRPF40B-208ENST00000548436 SLC25A36Q96CQ1 311 aa16.78■□□□□ 0.28
PRPF40B-208ENST00000548436 FRRS1LQ9P0K9 344 aa16.78■□□□□ 0.28
PRPF40B-208ENST00000548436 CACNG2Q9Y698 323 aa16.78■□□□□ 0.28
PRPF40B-208ENST00000548436 CACNA1EQ15878 2313 aa16.78■□□□□ 0.28
PRPF40B-208ENST00000548436 CACNA1CQ13936 2221 aa16.78■□□□□ 0.28
PRPF40B-208ENST00000548436 OR6C76A6NM76 312 aa16.77■□□□□ 0.28
PRPF40B-208ENST00000548436 INMT-MINDY4F8WBC2 141 aa16.77■□□□□ 0.28
PRPF40B-208ENST00000548436 ARHGEF9O43307 516 aa16.77■□□□□ 0.28
PRPF40B-208ENST00000548436 ORC5O43913 435 aa16.77■□□□□ 0.28
PRPF40B-208ENST00000548436 UBL3O95164 117 aa16.77■□□□□ 0.28
PRPF40B-208ENST00000548436 RENP00797 406 aa16.77■□□□□ 0.28
PRPF40B-208ENST00000548436 CD3GP09693 182 aa16.77■□□□□ 0.28
PRPF40B-208ENST00000548436 TACSTD2P09758 323 aa16.77■□□□□ 0.28
PRPF40B-208ENST00000548436 ARSBP15848 533 aa16.77■□□□□ 0.28
PRPF40B-208ENST00000548436 PRKCAP17252 672 aa16.77■□□□□ 0.28
PRPF40B-208ENST00000548436 PI4KAP42356 2102 aa16.77■□□□□ 0.28
PRPF40B-208ENST00000548436 RAB25P57735 213 aa16.77■□□□□ 0.28
PRPF40B-208ENST00000548436 DGCR2P98153 550 aa16.77■□□□□ 0.28
PRPF40B-208ENST00000548436 CBFBQ13951 182 aa16.77■□□□□ 0.28
PRPF40B-208ENST00000548436 RNASE12Q5GAN4 147 aaKnown RBP16.77■□□□□ 0.28
PRPF40B-208ENST00000548436 WDR45BQ5MNZ6 344 aa16.77■□□□□ 0.28
PRPF40B-208ENST00000548436 YOD1Q5VVQ6 348 aaPredicted RBP16.77■□□□□ 0.28
PRPF40B-208ENST00000548436 TMEM53Q6P2H8 277 aa16.77■□□□□ 0.28
PRPF40B-208ENST00000548436 C16orf47Q6ZP98 133 aaPredicted RBP16.77■□□□□ 0.28
PRPF40B-208ENST00000548436 KRT74Q7RTS7 529 aa16.77■□□□□ 0.28
PRPF40B-208ENST00000548436 FAM220AQ7Z4H9 259 aa16.77■□□□□ 0.28
PRPF40B-208ENST00000548436 HLA-CQ95604 372 aa16.77■□□□□ 0.28
PRPF40B-208ENST00000548436 CREB3L1Q96BA8 519 aa16.77■□□□□ 0.28
PRPF40B-208ENST00000548436 ZFP3Q96NJ6 502 aa16.77■□□□□ 0.28
PRPF40B-208ENST00000548436 TEKT2Q9UIF3 430 aa16.77■□□□□ 0.28
PRPF40B-208ENST00000548436 ITGB1BP2Q9UKP3 347 aa16.77■□□□□ 0.28
PRPF40B-208ENST00000548436 ATXN7L1Q9ULK2 861 aaPredicted RBP16.77■□□□□ 0.28
PRPF40B-208ENST00000548436 MRPS7Q9Y2R9 242 aaKnown RBP16.77■□□□□ 0.28
PRPF40B-208ENST00000548436 PCDHGA9Q9Y5G4 932 aaKnown RBP16.77■□□□□ 0.28
PRPF40B-208ENST00000548436 A0A1B0GTH9 108 aa16.77■□□□□ 0.27
PRPF40B-208ENST00000548436 IQCJ-SCHIP1C9J366 451 aaPredicted RBP16.77■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms