RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 GRID1Q9ULK0 1009 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 LRCH1Q9Y2L9 728 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 DTNAQ9Y4J8 743 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 SPIN1Q9Y657 262 aaPredicted RBP4.03□□□□□ -1.76
LIMS1-214ENST00000542845 DOCK11Q5JSL3 2073 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 SCO2A0A1W2PP80 73 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 ZNF503-AS2A6NEH8 195 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 C17orf100A8MU93 164 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 TRIM49D1C9J1S8 452 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 K7EIL1 84 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 MANBAO00462 879 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 GPR137BO60478 399 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 PSPNO60542 156 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 EIF4E2O60573 245 aaKnown RBP4.02□□□□□ -1.77
LIMS1-214ENST00000542845 EIF1BO60739 113 aaKnown RBP4.02□□□□□ -1.77
LIMS1-214ENST00000542845 SMIM24O75264 130 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 TUSC2O75896 110 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 ZNF432O94892 652 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 AKR7A3O95154 331 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 PPP1R3DO95685 299 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 CSTAP01040 98 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 IGKV3-15P01624 115 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 HLA-HP01893 362 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 KRT6AP02538 564 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 KRT6BP04259 564 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 SFTPBP07988 381 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 DBHP09172 617 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 FAHP16930 419 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 ZNF12P17014 697 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 MAKP20794 623 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 PAX7P23759 505 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 CRABP2P29373 138 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 HMOX2P30519 316 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 LCN1P31025 176 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 CD80P33681 288 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 GLRXP35754 106 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 APOBEC1P41238 236 aaKnown RBP4.02□□□□□ -1.77
LIMS1-214ENST00000542845 MAP3K8P41279 467 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 ASMTP46597 345 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 KRT6CP48668 564 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 ATP12AP54707 1039 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 PROK1P58294 105 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 SELENOVP59797 346 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 SEC61A1P61619 476 aaKnown RBP4.02□□□□□ -1.77
LIMS1-214ENST00000542845 GNB2P62879 340 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 SLC35A1P78382 337 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 MRPS11P82912 194 aaKnown RBP4.02□□□□□ -1.77
LIMS1-214ENST00000542845 POU3F1Q03052 451 aaPredicted RBP4.02□□□□□ -1.77
LIMS1-214ENST00000542845 GLO1Q04760 184 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 MALLQ13021 153 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 TRIM25Q14258 630 aaKnown RBP4.02□□□□□ -1.77
LIMS1-214ENST00000542845 CNN3Q15417 329 aaKnown RBP4.02□□□□□ -1.77
LIMS1-214ENST00000542845 GPR68Q15743 365 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 ZKSCAN8Q15776 578 aaPredicted RBP4.02□□□□□ -1.77
LIMS1-214ENST00000542845 C3orf36Q3SXR2 165 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 SPIN4Q56A73 249 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 TEX35Q5T0J7 233 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 PDZK1Q5T2W1 519 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 GRTP1Q5TC63 336 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 KLC3Q6P597 504 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 Q6ZTK2 550 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 ADGRG3Q86Y34 549 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 GLB1L2Q8IW92 636 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 C1orf174Q8IYL3 243 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 TMEM99Q8N816 258 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 ZIC4Q8N9L1 334 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 BHLHE22Q8NFJ8 381 aaPredicted RBP4.02□□□□□ -1.77
LIMS1-214ENST00000542845 IL17RDQ8NFM7 739 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 OR9K2Q8NGE7 335 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 RHEBL1Q8TAI7 183 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 METTL6Q8TCB7 284 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 ADAMTS15Q8TE58 950 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 TSPEARQ8WU66 669 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 SLC25A43Q8WUT9 341 aaPredicted RBP4.02□□□□□ -1.77
LIMS1-214ENST00000542845 LRTOMTQ8WZ04 291 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 ST8SIA1Q92185 356 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 PHF21AQ96BD5 680 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 DDIT4LQ96D03 193 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 TRIM44Q96DX7 344 aaPredicted RBP4.02□□□□□ -1.77
LIMS1-214ENST00000542845 DIRC2Q96SL1 478 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 CPNE1Q99829 537 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 SHCBP1LQ9BZQ2 653 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 TRIM31Q9BZY9 425 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 LAT2Q9GZY6 243 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 SAP30LQ9HAJ7 183 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 CHRNA9Q9UGM1 479 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 HDGFL3Q9Y3E1 203 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 POLR3HQ9Y535 204 aaPredicted RBP4.02□□□□□ -1.77
LIMS1-214ENST00000542845 INSIG2Q9Y5U4 225 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 KCNE3Q9Y6H6 103 aa4.02□□□□□ -1.77
LIMS1-214ENST00000542845 GIMAP1-GIMAP5A0A087WTJ2 511 aa4.01□□□□□ -1.77
LIMS1-214ENST00000542845 ZNF816-ZNF321PA0A0X1KG74 233 aa4.01□□□□□ -1.77
LIMS1-214ENST00000542845 SPRY3O43610 288 aa4.01□□□□□ -1.77
LIMS1-214ENST00000542845 RSL1D1O76021 490 aaKnown RBP4.01□□□□□ -1.77
LIMS1-214ENST00000542845 TGDSO95455 350 aa4.01□□□□□ -1.77
LIMS1-214ENST00000542845 HSPA4LO95757 839 aa4.01□□□□□ -1.77
LIMS1-214ENST00000542845 OTCP00480 354 aa4.01□□□□□ -1.77
LIMS1-214ENST00000542845 IGHMP01871 453 aa4.01□□□□□ -1.77
LIMS1-214ENST00000542845 HMGN2P05204 90 aaKnown RBP4.01□□□□□ -1.77
LIMS1-214ENST00000542845 LCKP06239 509 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms