RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 PIN1Q13526 163 aaPredicted RBP12.92□□□□□ -0.34
USP28-204ENST00000537642 CARD17Q5XLA6 110 aa12.92□□□□□ -0.34
USP28-204ENST00000537642 ANKRD16Q6P6B7 361 aa12.92□□□□□ -0.34
USP28-204ENST00000537642 HACD2Q6Y1H2 254 aa12.92□□□□□ -0.34
USP28-204ENST00000537642 DEF8Q6ZN54 512 aa12.92□□□□□ -0.34
USP28-204ENST00000537642 PXKQ7Z7A4 578 aa12.92□□□□□ -0.34
USP28-204ENST00000537642 DTX2Q86UW9 622 aa12.92□□□□□ -0.34
USP28-204ENST00000537642 NKAIN4Q8IVV8 208 aa12.92□□□□□ -0.34
USP28-204ENST00000537642 C20orf196Q8IYI0 205 aa12.92□□□□□ -0.34
USP28-204ENST00000537642 LRRC17Q8N6Y2 441 aa12.92□□□□□ -0.34
USP28-204ENST00000537642 PIK3C3Q8NEB9 887 aa12.92□□□□□ -0.34
USP28-204ENST00000537642 ANKK1Q8NFD2 765 aa12.92□□□□□ -0.34
USP28-204ENST00000537642 MAGEE2Q8TD90 523 aaPredicted RBP12.92□□□□□ -0.34
USP28-204ENST00000537642 TPD52L3Q96J77 140 aa12.92□□□□□ -0.34
USP28-204ENST00000537642 HOPXQ9BPY8 73 aaPredicted RBP12.92□□□□□ -0.34
USP28-204ENST00000537642 SLC19A3Q9BZV2 496 aa12.92□□□□□ -0.34
USP28-204ENST00000537642 POLR2J2Q9GZM3 115 aaKnown RBP12.92□□□□□ -0.34
USP28-204ENST00000537642 POLR2J3Q9H1A7 115 aaKnown RBP12.92□□□□□ -0.34
USP28-204ENST00000537642 GSX1Q9H4S2 264 aaPredicted RBP12.92□□□□□ -0.34
USP28-204ENST00000537642 FKRPQ9H9S5 495 aa12.92□□□□□ -0.34
USP28-204ENST00000537642 EFCAB1Q9HAE3 211 aa12.92□□□□□ -0.34
USP28-204ENST00000537642 OBP2BQ9NPH6 170 aa12.92□□□□□ -0.34
USP28-204ENST00000537642 MEPEQ9NQ76 525 aaPredicted RBP12.92□□□□□ -0.34
USP28-204ENST00000537642 RIMS3Q9UJD0 308 aa12.92□□□□□ -0.34
USP28-204ENST00000537642 ARPC4-TTLL3A0A0A6YYG9 625 aa12.91□□□□□ -0.34
USP28-204ENST00000537642 SLC35F4A4IF30 521 aa12.91□□□□□ -0.34
USP28-204ENST00000537642 C11orf98E9PRG8 122 aa12.91□□□□□ -0.34
USP28-204ENST00000537642 SNX3O60493 162 aa12.91□□□□□ -0.34
USP28-204ENST00000537642 SERPINI2O75830 405 aa12.91□□□□□ -0.34
USP28-204ENST00000537642 OR5F1O95221 314 aa12.91□□□□□ -0.34
USP28-204ENST00000537642 ASAH2BP0C7U1 165 aa12.91□□□□□ -0.34
USP28-204ENST00000537642 AHCYP23526 432 aa12.91□□□□□ -0.34
USP28-204ENST00000537642 GYS2P54840 703 aa12.91□□□□□ -0.34
USP28-204ENST00000537642 UGT2B15P54855 530 aa12.91□□□□□ -0.34
USP28-204ENST00000537642 UBE2NP61088 152 aaKnown RBP12.91□□□□□ -0.34
USP28-204ENST00000537642 SELENOWP63302 87 aa12.91□□□□□ -0.34
USP28-204ENST00000537642 TUBA1BP68363 451 aa12.91□□□□□ -0.34
USP28-204ENST00000537642 TUBA4AP68366 448 aa12.91□□□□□ -0.34
USP28-204ENST00000537642 ZP4Q12836 540 aa12.91□□□□□ -0.34
USP28-204ENST00000537642 CEACAM16Q2WEN9 425 aa12.91□□□□□ -0.34
USP28-204ENST00000537642 TUBA1AQ71U36 451 aa12.91□□□□□ -0.34
USP28-204ENST00000537642 SLC46A3Q7Z3Q1 461 aa12.91□□□□□ -0.34
USP28-204ENST00000537642 CIARTQ8N365 385 aaPredicted RBP12.91□□□□□ -0.34
USP28-204ENST00000537642 PFN4Q8NHR9 129 aa12.91□□□□□ -0.34
USP28-204ENST00000537642 C18orf12Q96KH6 178 aa12.91□□□□□ -0.34
USP28-204ENST00000537642 LRR1Q96L50 414 aa12.91□□□□□ -0.34
USP28-204ENST00000537642 DHRS9Q9BPW9 319 aa12.91□□□□□ -0.34
USP28-204ENST00000537642 CRLF2Q9HC73 371 aa12.91□□□□□ -0.34
USP28-204ENST00000537642 NANSQ9NR45 359 aa12.91□□□□□ -0.34
USP28-204ENST00000537642 FAIMQ9NVQ4 179 aa12.91□□□□□ -0.34
USP28-204ENST00000537642 TAS2R5Q9NYW4 299 aa12.91□□□□□ -0.34
USP28-204ENST00000537642 ZNF229Q9UJW7 825 aa12.91□□□□□ -0.34
USP28-204ENST00000537642 POU2F3Q9UKI9 436 aa12.91□□□□□ -0.34
USP28-204ENST00000537642 SETD2Q9BYW2 2564 aaPredicted RBP12.91□□□□□ -0.34
USP28-204ENST00000537642 IGHV1-18A0A0C4DH31 117 aa12.9□□□□□ -0.34
USP28-204ENST00000537642 GMNCA6NCL1 334 aa12.9□□□□□ -0.34
USP28-204ENST00000537642 TRIM64A6NGJ6 449 aa12.9□□□□□ -0.34
USP28-204ENST00000537642 TRIM64BA6NI03 449 aa12.9□□□□□ -0.34
USP28-204ENST00000537642 M0R3G1 203 aa12.9□□□□□ -0.34
USP28-204ENST00000537642 OR6A2O95222 327 aa12.9□□□□□ -0.34
USP28-204ENST00000537642 INHBBP09529 407 aa12.9□□□□□ -0.34
USP28-204ENST00000537642 HOXB1P14653 301 aaPredicted RBP12.9□□□□□ -0.34
USP28-204ENST00000537642 GSK3BP49841 420 aa12.9□□□□□ -0.34
USP28-204ENST00000537642 NUDT2P50583 147 aa12.9□□□□□ -0.34
USP28-204ENST00000537642 CAMK2DQ13557 499 aa12.9□□□□□ -0.34
USP28-204ENST00000537642 C11orf71Q6IPW1 123 aa12.9□□□□□ -0.34
USP28-204ENST00000537642 VTCN1Q7Z7D3 282 aa12.9□□□□□ -0.34
USP28-204ENST00000537642 DEPDC4Q8N2C3 294 aa12.9□□□□□ -0.34
USP28-204ENST00000537642 TMEM255BQ8WV15 326 aa12.9□□□□□ -0.34
USP28-204ENST00000537642 GTPBP3Q969Y2 492 aaKnown RBP12.9□□□□□ -0.34
USP28-204ENST00000537642 SLC38A2Q96QD8 506 aa12.9□□□□□ -0.34
USP28-204ENST00000537642 SMR3AQ99954 134 aa12.9□□□□□ -0.34
USP28-204ENST00000537642 GRIP2Q9C0E4 1043 aa12.9□□□□□ -0.34
USP28-204ENST00000537642 NSRP1Q9H0G5 558 aaKnown RBP12.9□□□□□ -0.34
USP28-204ENST00000537642 ALG2Q9H553 416 aa12.9□□□□□ -0.34
USP28-204ENST00000537642 CRNNQ9UBG3 495 aaPredicted RBP12.9□□□□□ -0.34
USP28-204ENST00000537642 ATP23Q9Y6H3 246 aa12.9□□□□□ -0.34
USP28-204ENST00000537642 ZNF726A6NNF4 738 aa12.89□□□□□ -0.35
USP28-204ENST00000537642 ZNF99A8MXY4 864 aaPredicted RBP12.89□□□□□ -0.35
USP28-204ENST00000537642 ATP6V1G2-DDX39BF2Z307 99 aa12.89□□□□□ -0.35
USP28-204ENST00000537642 H7C1Q1 480 aa12.89□□□□□ -0.35
USP28-204ENST00000537642 CXCR6O00574 342 aa12.89□□□□□ -0.35
USP28-204ENST00000537642 SEC14L2O76054 403 aa12.89□□□□□ -0.35
USP28-204ENST00000537642 MT-ND1P03886 318 aa12.89□□□□□ -0.35
USP28-204ENST00000537642 THRBP10828 461 aa12.89□□□□□ -0.35
USP28-204ENST00000537642 IFNGR1P15260 489 aa12.89□□□□□ -0.35
USP28-204ENST00000537642 PAX7P23759 505 aa12.89□□□□□ -0.35
USP28-204ENST00000537642 PRDX6P30041 224 aa12.89□□□□□ -0.35
USP28-204ENST00000537642 TTKP33981 857 aa12.89□□□□□ -0.35
USP28-204ENST00000537642 RBM34P42696 430 aaKnown RBP12.89□□□□□ -0.35
USP28-204ENST00000537642 BIDP55957 195 aa12.89□□□□□ -0.35
USP28-204ENST00000537642 RIPPLY3P57055 190 aa12.89□□□□□ -0.35
USP28-204ENST00000537642 AGAP6Q5VW22 663 aa12.89□□□□□ -0.35
USP28-204ENST00000537642 SLC35D2Q76EJ3 337 aa12.89□□□□□ -0.35
USP28-204ENST00000537642 CPLX4Q7Z7G2 160 aa12.89□□□□□ -0.35
USP28-204ENST00000537642 TMEM239Q8WW34 195 aa12.89□□□□□ -0.35
USP28-204ENST00000537642 CMTM5Q96DZ9 223 aa12.89□□□□□ -0.35
USP28-204ENST00000537642 TRMT61AQ96FX7 289 aaKnown RBP12.89□□□□□ -0.35
USP28-204ENST00000537642 COX4I2Q96KJ9 171 aa12.89□□□□□ -0.35
USP28-204ENST00000537642 C20orf141Q9NUB4 165 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms