RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 COPS3Q9UNS2 423 aa1.38□□□□□ -2.19
VPS50-216ENST00000484954 MFHAS1Q9Y4C4 1052 aa1.38□□□□□ -2.19
VPS50-216ENST00000484954 SDK2Q58EX2 2172 aa1.38□□□□□ -2.19
VPS50-216ENST00000484954 ITGB4P16144 1822 aa1.38□□□□□ -2.19
VPS50-216ENST00000484954 SF3B1O75533 1304 aaKnown RBP eCLIP1.38□□□□□ -2.19
VPS50-216ENST00000484954 GPATCH8Q9UKJ3 1502 aaKnown RBP1.37□□□□□ -2.19
VPS50-216ENST00000484954 KRT87PA6NCN2 255 aa1.37□□□□□ -2.19
VPS50-216ENST00000484954 H0YHG0 523 aa1.37□□□□□ -2.19
VPS50-216ENST00000484954 RBFOX2O43251 390 aaKnown RBP eCLIP1.37□□□□□ -2.19
VPS50-216ENST00000484954 VAMP5O95183 116 aa1.37□□□□□ -2.19
VPS50-216ENST00000484954 GAP43P17677 238 aa1.37□□□□□ -2.19
VPS50-216ENST00000484954 GCAP28676 217 aa1.37□□□□□ -2.19
VPS50-216ENST00000484954 ATP6V1E1P36543 226 aa1.37□□□□□ -2.19
VPS50-216ENST00000484954 CD86P42081 329 aa1.37□□□□□ -2.19
VPS50-216ENST00000484954 CASP4P49662 377 aa1.37□□□□□ -2.19
VPS50-216ENST00000484954 ESRRGP62508 458 aa1.37□□□□□ -2.19
VPS50-216ENST00000484954 SLC7A9P82251 487 aa1.37□□□□□ -2.19
VPS50-216ENST00000484954 IL1RL1Q01638 556 aa1.37□□□□□ -2.19
VPS50-216ENST00000484954 TTLL9Q3SXZ7 439 aa1.37□□□□□ -2.19
VPS50-216ENST00000484954 ZBED5Q49AG3 693 aa1.37□□□□□ -2.19
VPS50-216ENST00000484954 CNSTQ6PJW8 725 aa1.37□□□□□ -2.19
VPS50-216ENST00000484954 HSDL2Q6YN16 418 aa1.37□□□□□ -2.19
VPS50-216ENST00000484954 NTM-AS1Q6ZSK4 140 aa1.37□□□□□ -2.19
VPS50-216ENST00000484954 SLC35F2Q8IXU6 374 aa1.37□□□□□ -2.19
VPS50-216ENST00000484954 STPG2Q8N412 459 aa1.37□□□□□ -2.19
VPS50-216ENST00000484954 ACOT4Q8N9L9 421 aa1.37□□□□□ -2.19
VPS50-216ENST00000484954 OR10T2Q8NGX3 314 aa1.37□□□□□ -2.19
VPS50-216ENST00000484954 RGP1Q92546 391 aaPredicted RBP1.37□□□□□ -2.19
VPS50-216ENST00000484954 ECSITQ9BQ95 431 aa1.37□□□□□ -2.19
VPS50-216ENST00000484954 ELOVL3Q9HB03 270 aa1.37□□□□□ -2.19
VPS50-216ENST00000484954 CD84Q9UIB8 345 aa1.37□□□□□ -2.19
VPS50-216ENST00000484954 CARHSP1Q9Y2V2 147 aaKnown RBP1.37□□□□□ -2.19
VPS50-216ENST00000484954 MEMO1Q9Y316 297 aa1.37□□□□□ -2.19
VPS50-216ENST00000484954 TNS2Q63HR2 1409 aa1.37□□□□□ -2.19
VPS50-216ENST00000484954 WDR62O43379 1518 aa1.36□□□□□ -2.19
VPS50-216ENST00000484954 SHROOM3Q8TF72 1996 aa1.36□□□□□ -2.19
VPS50-216ENST00000484954 IGLV3-22A0A075B6J6 115 aa1.36□□□□□ -2.19
VPS50-216ENST00000484954 IGLV3-12A0A075B6K2 115 aa1.36□□□□□ -2.19
VPS50-216ENST00000484954 IGKV3D-11A0A0A0MRZ8 115 aa1.36□□□□□ -2.19
VPS50-216ENST00000484954 IGKV1D-13A0A0B4J2D9 117 aa1.36□□□□□ -2.19
VPS50-216ENST00000484954 CIB4A0PJX0 185 aa1.36□□□□□ -2.19
VPS50-216ENST00000484954 BTN3A3O00478 584 aa1.36□□□□□ -2.19
VPS50-216ENST00000484954 ZNF207O43670 478 aaKnown RBP1.36□□□□□ -2.19
VPS50-216ENST00000484954 PRPSAP2O60256 369 aa1.36□□□□□ -2.19
VPS50-216ENST00000484954 CBR3O75828 277 aa1.36□□□□□ -2.19
VPS50-216ENST00000484954 CCNKO75909 580 aa1.36□□□□□ -2.19
VPS50-216ENST00000484954 OXSR1O95747 527 aaPredicted RBP1.36□□□□□ -2.19
VPS50-216ENST00000484954 POLR2MP0CAP2 368 aa1.36□□□□□ -2.19
VPS50-216ENST00000484954 IGKV1-13P0DP09 117 aa1.36□□□□□ -2.19
VPS50-216ENST00000484954 COL8A2P25067 703 aa1.36□□□□□ -2.19
VPS50-216ENST00000484954 HTR2AP28223 471 aa1.36□□□□□ -2.19
VPS50-216ENST00000484954 RAP1AP62834 184 aa1.36□□□□□ -2.19
VPS50-216ENST00000484954 OXA1LQ15070 435 aa1.36□□□□□ -2.19
VPS50-216ENST00000484954 TMEM41BQ5BJD5 291 aa1.36□□□□□ -2.19
VPS50-216ENST00000484954 COA6Q5JTJ3 125 aaKnown RBP1.36□□□□□ -2.19
VPS50-216ENST00000484954 BLOC1S2Q6QNY1 142 aa1.36□□□□□ -2.19
VPS50-216ENST00000484954 ARL10Q8N8L6 244 aa1.36□□□□□ -2.19
VPS50-216ENST00000484954 VN1R2Q8NFZ6 395 aa1.36□□□□□ -2.19
VPS50-216ENST00000484954 CCDC47Q96A33 483 aaKnown RBP1.36□□□□□ -2.19
VPS50-216ENST00000484954 KRT23Q9C075 422 aa1.36□□□□□ -2.19
VPS50-216ENST00000484954 RANBP3Q9H6Z4 567 aaPredicted RBP1.36□□□□□ -2.19
VPS50-216ENST00000484954 CHRNA9Q9UGM1 479 aa1.36□□□□□ -2.19
VPS50-216ENST00000484954 CEMIPQ8WUJ3 1361 aa1.35□□□□□ -2.19
VPS50-216ENST00000484954 A0A087WZY1 265 aa1.35□□□□□ -2.19
VPS50-216ENST00000484954 TCRBV9S1A1TA0A576 114 aa1.35□□□□□ -2.19
VPS50-216ENST00000484954 H3BNH8 94 aa1.35□□□□□ -2.19
VPS50-216ENST00000484954 CALCBP10092 127 aa1.35□□□□□ -2.19
VPS50-216ENST00000484954 ARF4P18085 180 aaPredicted RBP1.35□□□□□ -2.19
VPS50-216ENST00000484954 IMPDH1P20839 514 aa1.35□□□□□ -2.19
VPS50-216ENST00000484954 PAX7P23759 505 aa1.35□□□□□ -2.19
VPS50-216ENST00000484954 HMGB2P26583 209 aaKnown RBP1.35□□□□□ -2.19
VPS50-216ENST00000484954 CA8P35219 290 aa1.35□□□□□ -2.19
VPS50-216ENST00000484954 GYG1P46976 350 aa1.35□□□□□ -2.19
VPS50-216ENST00000484954 TNFRSF17Q02223 184 aa1.35□□□□□ -2.19
VPS50-216ENST00000484954 ASPHQ12797 758 aa1.35□□□□□ -2.19
VPS50-216ENST00000484954 IGFBP7Q16270 282 aa1.35□□□□□ -2.19
VPS50-216ENST00000484954 DUSP7Q16829 419 aa1.35□□□□□ -2.19
VPS50-216ENST00000484954 NCR3LG1Q68D85 454 aa1.35□□□□□ -2.19
VPS50-216ENST00000484954 BIVMQ86UB2 503 aa1.35□□□□□ -2.19
VPS50-216ENST00000484954 CCDC65Q8IXS2 484 aa1.35□□□□□ -2.19
VPS50-216ENST00000484954 PIANPQ8IYJ0 282 aa1.35□□□□□ -2.19
VPS50-216ENST00000484954 CENPLQ8N0S6 344 aaPredicted RBP1.35□□□□□ -2.19
VPS50-216ENST00000484954 LGI3Q8N145 548 aa1.35□□□□□ -2.19
VPS50-216ENST00000484954 FADS6Q8N9I5 356 aa1.35□□□□□ -2.19
VPS50-216ENST00000484954 IPMKQ8NFU5 416 aa1.35□□□□□ -2.19
VPS50-216ENST00000484954 OR52H1Q8NGJ2 320 aa1.35□□□□□ -2.19
VPS50-216ENST00000484954 OR4D5Q8NGN0 318 aa1.35□□□□□ -2.19
VPS50-216ENST00000484954 UFD1Q92890 307 aa1.35□□□□□ -2.19
VPS50-216ENST00000484954 GABARAPL3Q9BY60 117 aa1.35□□□□□ -2.19
VPS50-216ENST00000484954 C1orf21Q9H246 121 aa1.35□□□□□ -2.19
VPS50-216ENST00000484954 LY9Q9HBG7 655 aa1.35□□□□□ -2.19
VPS50-216ENST00000484954 RAB18Q9NP72 206 aa1.35□□□□□ -2.19
VPS50-216ENST00000484954 ZNRD1Q9P1U0 126 aa1.35□□□□□ -2.19
VPS50-216ENST00000484954 IGLV1-50A0A075B6I6 118 aa1.34□□□□□ -2.19
VPS50-216ENST00000484954 F5H6K3 240 aa1.34□□□□□ -2.19
VPS50-216ENST00000484954 SGK1O00141 431 aa1.34□□□□□ -2.19
VPS50-216ENST00000484954 XKRYO14609 159 aa1.34□□□□□ -2.19
VPS50-216ENST00000484954 HSD17B6O14756 317 aa1.34□□□□□ -2.19
VPS50-216ENST00000484954 ATP5LO75964 103 aa1.34□□□□□ -2.19
VPS50-216ENST00000484954 UBTFL1P0CB47 393 aaPredicted RBP1.34□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms