RNA–Protein interactions for RNA: ENST00000484581.6

VPS13A-211, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2 BASIC

Gene VPS13A, Length 1,155 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-211ENST00000484581 ITCHQ96J02 903 aa3.42□□□□□ -1.86
VPS13A-211ENST00000484581 C1orf147Q96MC9 270 aaPredicted RBP3.42□□□□□ -1.86
VPS13A-211ENST00000484581 KIR2DL4Q99706 377 aa3.42□□□□□ -1.86
VPS13A-211ENST00000484581 SLC29A1Q99808 456 aa3.42□□□□□ -1.86
VPS13A-211ENST00000484581 Q9H3A6 140 aa3.42□□□□□ -1.86
VPS13A-211ENST00000484581 XKR8Q9H6D3 395 aa3.42□□□□□ -1.86
VPS13A-211ENST00000484581 KLHL21Q9UJP4 597 aa3.42□□□□□ -1.86
VPS13A-211ENST00000484581 LSM7Q9UK45 103 aaKnown RBP3.42□□□□□ -1.86
VPS13A-211ENST00000484581 PRSS21Q9Y6M0 314 aa3.42□□□□□ -1.86
VPS13A-211ENST00000484581 FANCIQ9NVI1 1328 aa3.42□□□□□ -1.86
VPS13A-211ENST00000484581 IGHV3OR16-13A0A075B7E8 117 aa3.41□□□□□ -1.86
VPS13A-211ENST00000484581 KCNE1BA0A087WTH5 132 aa3.41□□□□□ -1.86
VPS13A-211ENST00000484581 TEX46H3BTG2 121 aa3.41□□□□□ -1.86
VPS13A-211ENST00000484581 ZNF701M0R085 212 aaPredicted RBP3.41□□□□□ -1.86
VPS13A-211ENST00000484581 ZNF354AO60765 605 aaPredicted RBP3.41□□□□□ -1.86
VPS13A-211ENST00000484581 FGFR1OPO95684 399 aaKnown RBP3.41□□□□□ -1.86
VPS13A-211ENST00000484581 SNAI1O95863 264 aaPredicted RBP3.41□□□□□ -1.86
VPS13A-211ENST00000484581 SEMG1P04279 462 aa3.41□□□□□ -1.86
VPS13A-211ENST00000484581 TPM1P09493 284 aa3.41□□□□□ -1.86
VPS13A-211ENST00000484581 SRMP19623 302 aa3.41□□□□□ -1.86
VPS13A-211ENST00000484581 ATP6V1B2P21281 511 aa3.41□□□□□ -1.86
VPS13A-211ENST00000484581 TUBG1P23258 451 aa3.41□□□□□ -1.86
VPS13A-211ENST00000484581 RORAP35398 523 aa3.41□□□□□ -1.86
VPS13A-211ENST00000484581 CX3CR1P49238 355 aa3.41□□□□□ -1.86
VPS13A-211ENST00000484581 SSR4P51571 173 aa3.41□□□□□ -1.86
VPS13A-211ENST00000484581 YWHAGP61981 247 aaKnown RBP eCLIP3.41□□□□□ -1.86
VPS13A-211ENST00000484581 LCE1FQ5T754 118 aa3.41□□□□□ -1.86
VPS13A-211ENST00000484581 RNLSQ5VYX0 342 aa3.41□□□□□ -1.86
VPS13A-211ENST00000484581 ZNF772Q68DY9 489 aaPredicted RBP3.41□□□□□ -1.86
VPS13A-211ENST00000484581 CGB2Q6NT52 195 aa3.41□□□□□ -1.86
VPS13A-211ENST00000484581 Q6ZN92 141 aa3.41□□□□□ -1.86
VPS13A-211ENST00000484581 MOB1BQ7L9L4 216 aa3.41□□□□□ -1.86
VPS13A-211ENST00000484581 PRSS41Q7RTY9 318 aa3.41□□□□□ -1.86
VPS13A-211ENST00000484581 ZNF546Q86UE3 836 aa3.41□□□□□ -1.86
VPS13A-211ENST00000484581 OR9G4Q8NGQ1 327 aa3.41□□□□□ -1.86
VPS13A-211ENST00000484581 OR1S2Q8NGQ3 325 aa3.41□□□□□ -1.86
VPS13A-211ENST00000484581 OR2G2Q8NGZ5 317 aa3.41□□□□□ -1.86
VPS13A-211ENST00000484581 RHEBL1Q8TAI7 183 aa3.41□□□□□ -1.86
VPS13A-211ENST00000484581 SMARCD2Q92925 531 aa3.41□□□□□ -1.86
VPS13A-211ENST00000484581 SIGLEC12Q96PQ1 595 aa3.41□□□□□ -1.86
VPS13A-211ENST00000484581 ZNF184Q99676 751 aaPredicted RBP3.41□□□□□ -1.86
VPS13A-211ENST00000484581 PAXXQ9BUH6 204 aa3.41□□□□□ -1.86
VPS13A-211ENST00000484581 ACTR6Q9GZN1 396 aa3.41□□□□□ -1.86
VPS13A-211ENST00000484581 C20orf85Q9H1P6 137 aa3.41□□□□□ -1.86
VPS13A-211ENST00000484581 EHD1Q9H4M9 534 aa3.41□□□□□ -1.86
VPS13A-211ENST00000484581 C8orf33Q9H7E9 229 aaPredicted RBP3.41□□□□□ -1.86
VPS13A-211ENST00000484581 MRPL47Q9HD33 250 aaKnown RBP3.41□□□□□ -1.86
VPS13A-211ENST00000484581 FGF20Q9NP95 211 aaPredicted RBP3.41□□□□□ -1.86
VPS13A-211ENST00000484581 ADAP2Q9NPF8 381 aa3.41□□□□□ -1.86
VPS13A-211ENST00000484581 TUBG2Q9NRH3 451 aa3.41□□□□□ -1.86
VPS13A-211ENST00000484581 KCNIP1Q9NZI2 227 aa3.41□□□□□ -1.86
VPS13A-211ENST00000484581 MTCH1Q9NZJ7 389 aa3.41□□□□□ -1.86
VPS13A-211ENST00000484581 MMP17Q9ULZ9 603 aa3.41□□□□□ -1.86
VPS13A-211ENST00000484581 IGLV3-22A0A075B6J6 115 aa3.4□□□□□ -1.87
VPS13A-211ENST00000484581 ERICH4A6NGS2 130 aa3.4□□□□□ -1.87
VPS13A-211ENST00000484581 KRTAP16-1A8MUX0 517 aa3.4□□□□□ -1.87
VPS13A-211ENST00000484581 PPP1R2P9O14990 202 aa3.4□□□□□ -1.87
VPS13A-211ENST00000484581 NEMFO60524 1076 aa3.4□□□□□ -1.87
VPS13A-211ENST00000484581 EEDO75530 441 aaKnown RBP3.4□□□□□ -1.87
VPS13A-211ENST00000484581 RHOXF2BP0C7M4 288 aa3.4□□□□□ -1.87
VPS13A-211ENST00000484581 U2AF2P26368 475 aaKnown RBP eCLIP3.4□□□□□ -1.871e-6■■■■□ 25.1
VPS13A-211ENST00000484581 GDF1P27539 372 aa3.4□□□□□ -1.87
VPS13A-211ENST00000484581 BMI1P35226 326 aa3.4□□□□□ -1.87
VPS13A-211ENST00000484581 NUP62P37198 522 aaPredicted RBP3.4□□□□□ -1.87
VPS13A-211ENST00000484581 MDH2P40926 338 aaKnown RBP3.4□□□□□ -1.87
VPS13A-211ENST00000484581 CLDN18P56856 261 aa3.4□□□□□ -1.87
VPS13A-211ENST00000484581 EGFEM1PQ0D2K5 195 aa3.4□□□□□ -1.87
VPS13A-211ENST00000484581 IFT88Q13099 833 aa3.4□□□□□ -1.87
VPS13A-211ENST00000484581 Q1RN00 199 aa3.4□□□□□ -1.87
VPS13A-211ENST00000484581 HIGD2BQ4VC39 106 aa3.4□□□□□ -1.87
VPS13A-211ENST00000484581 PRR30Q53SZ7 412 aaPredicted RBP3.4□□□□□ -1.87
VPS13A-211ENST00000484581 VAX1Q5SQQ9 334 aa3.4□□□□□ -1.87
VPS13A-211ENST00000484581 OR52W1Q6IF63 320 aa3.4□□□□□ -1.87
VPS13A-211ENST00000484581 POGZQ7Z3K3 1410 aa3.4□□□□□ -1.87
VPS13A-211ENST00000484581 APOBEC3FQ8IUX4 373 aaKnown RBP3.4□□□□□ -1.87
VPS13A-211ENST00000484581 PDIK1LQ8N165 341 aa3.4□□□□□ -1.87
VPS13A-211ENST00000484581 LIX1Q8N485 282 aa3.4□□□□□ -1.87
VPS13A-211ENST00000484581 ZNF557Q8N988 423 aaPredicted RBP3.4□□□□□ -1.87
VPS13A-211ENST00000484581 C8orf31Q8N9H6 132 aa3.4□□□□□ -1.87
VPS13A-211ENST00000484581 OR10G3Q8NGC4 313 aa3.4□□□□□ -1.87
VPS13A-211ENST00000484581 OR51S1Q8NGJ8 323 aa3.4□□□□□ -1.87
VPS13A-211ENST00000484581 VSIG2Q96IQ7 327 aa3.4□□□□□ -1.87
VPS13A-211ENST00000484581 XPO6Q96QU8 1125 aaKnown RBP3.4□□□□□ -1.87
VPS13A-211ENST00000484581 RHOXF2Q9BQY4 288 aa3.4□□□□□ -1.87
VPS13A-211ENST00000484581 TMEM246Q9BRR3 403 aa3.4□□□□□ -1.87
VPS13A-211ENST00000484581 RNF167Q9H6Y7 350 aa3.4□□□□□ -1.87
VPS13A-211ENST00000484581 RANBP3Q9H6Z4 567 aaPredicted RBP3.4□□□□□ -1.87
VPS13A-211ENST00000484581 LZTFL1Q9NQ48 299 aa3.4□□□□□ -1.87
VPS13A-211ENST00000484581 TREM2Q9NZC2 230 aa3.4□□□□□ -1.87
VPS13A-211ENST00000484581 UXTQ9UBK9 157 aaPredicted RBP3.4□□□□□ -1.87
VPS13A-211ENST00000484581 KIF25Q9UIL4 384 aa3.4□□□□□ -1.87
VPS13A-211ENST00000484581 RHBDD3Q9Y3P4 386 aa3.4□□□□□ -1.87
VPS13A-211ENST00000484581 COMMD3-BMI1R4GMX3 469 aa3.4□□□□□ -1.87
VPS13A-211ENST00000484581 RAI1Q7Z5J4 1906 aaPredicted RBP3.39□□□□□ -1.87
VPS13A-211ENST00000484581 A0A087WWV3 80 aa3.39□□□□□ -1.87
VPS13A-211ENST00000484581 A0A0J9YYE9 177 aa3.39□□□□□ -1.87
VPS13A-211ENST00000484581 A6NIZ1 184 aa3.39□□□□□ -1.87
VPS13A-211ENST00000484581 SRRM5B3KS81 715 aa3.39□□□□□ -1.87
VPS13A-211ENST00000484581 CDC7O00311 574 aa3.39□□□□□ -1.87
VPS13A-211ENST00000484581 CHMP2AO43633 222 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms