RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 FANCIQ9NVI1 1328 aa1.9□□□□□ -2.11
CCDC88A-212ENST00000474059 ZNFX1Q9P2E3 1918 aaKnown RBP1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 CDC42BPBQ9Y5S2 1711 aa1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 PPIAL4EA0A075B759 164 aa1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 A0A0U1RQS6 177 aa1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 A0A1W2PQ67 120 aa1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 C12orf77C9JDV5 145 aa1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 H0Y8G0 127 aa1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 KLF8O95600 359 aaPredicted RBP1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 MOSP00540 346 aa1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 INSP01308 110 aa1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 GIPP09681 153 aaPredicted RBP1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 PPIAL4FP0DN26 164 aa1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 SLC2A3P11169 496 aa1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 RCC1P18754 421 aaPredicted RBP1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 CMA1P23946 247 aa1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 FDFT1P37268 417 aa1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 SULT1E1P49888 294 aa1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 ACTR3P61158 418 aa1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 MRPL28Q13084 256 aaKnown RBP1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 UNC119Q13432 240 aa1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 GPNMBQ14956 572 aa1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 KCTD19Q17RG1 926 aaPredicted RBP1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 KCTD21Q4G0X4 260 aa1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 PRAMEF5Q5TYX0 476 aa1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 PRAMEF6Q5VXH4 476 aa1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 ACP7Q6ZNF0 438 aa1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 THOC6Q86W42 341 aaKnown RBP1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 PLA2G4DQ86XP0 818 aa1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 EGFL6Q8IUX8 553 aa1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 SLC22A9Q8IVM8 553 aa1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 TMEM61Q8N0U2 210 aa1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 CNPY4Q8N129 248 aa1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 FAM71E2Q8N5Q1 922 aa1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 OR2L3Q8NG85 312 aa1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 OR4F6Q8NGB9 312 aa1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 ACOT11Q8WXI4 607 aaPredicted RBP1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 NDRG1Q92597 394 aaKnown RBP1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 FGF14Q92915 247 aa1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 TUBGCP3Q96CW5 907 aa1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 IFT74Q96LB3 600 aa1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 NRTNQ99748 197 aa1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 RIOK1Q9BRS2 568 aaKnown RBP1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 PELOQ9BRX2 385 aaKnown RBP1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 SIAEQ9HAT2 523 aa1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 NT5MQ9NPB1 228 aa1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 CCL28Q9NRJ3 127 aa1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 NEU3Q9UQ49 428 aa1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 RRP15Q9Y3B9 282 aaKnown RBP1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 PEX16Q9Y5Y5 336 aa1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 SLC25A15Q9Y619 301 aa1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 ASTN1O14525 1302 aa1.89□□□□□ -2.11
CCDC88A-212ENST00000474059 A0A0G2JN53 185 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 A0A1B0GUA9 196 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 XKRY2A2RUG3 117 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 CCDC182A6NF36 153 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 UBXN8O00124 270 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 C1orf105O95561 183 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 TMEM50AO95807 157 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 IGHV2-5P01817 119 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 FGF1P05230 155 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 IGHV4-34P06331 123 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 CT62P0C5K7 136 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 TDGF1P13385 188 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 KITLGP21583 273 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 CASP14P31944 242 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 HSD17B2P37059 387 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 VHLP40337 213 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 YAP1P46937 504 aaKnown RBP1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 TDGF1P3P51864 188 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 SH3BGRP55822 239 aaPredicted RBP1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 ERVK-25P63136 954 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 IRX3P78415 501 aaPredicted RBP1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 ACVR1Q04771 509 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 BST2Q10589 180 aaKnown RBP1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 KIAA0087Q14695 138 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 CYTH1Q15438 398 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 TRIM40Q6P9F5 258 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 C6orf89Q6UWU4 347 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 NANOGNBQ7Z5D8 188 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 CDR2LQ86X02 465 aaPredicted RBP1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 PSTKQ8IV42 348 aaKnown RBP1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 NECAB1Q8N987 351 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 OR9K2Q8NGE7 335 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 AKR7LQ8NHP1 331 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 SMARCD2Q92925 531 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 TPD52L3Q96J77 140 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 OR8B4Q96RC9 309 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 MYCBPQ99417 103 aaPredicted RBP1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 TCHPQ9BT92 498 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 MFFQ9GZY8 342 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 DEFB127Q9H1M4 99 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 SRMSQ9H3Y6 488 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 PATZ1Q9HBE1 687 aaKnown RBP1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 EML4Q9HC35 981 aaKnown RBP1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 ZFP14Q9HCL3 533 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 ADAP2Q9NPF8 381 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 ETNK2Q9NVF9 386 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 CALYQ9NYX4 217 aa1.88□□□□□ -2.11
CCDC88A-212ENST00000474059 ZNF225Q9UK10 706 aa1.88□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms