RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 SNX33Q8WV41 574 aa16.5■□□□□ 0.23
COL9A3-205ENST00000466192 DIRAS2Q96HU8 199 aa16.5■□□□□ 0.23
COL9A3-205ENST00000466192 CCDC32Q9BV29 185 aa16.5■□□□□ 0.23
COL9A3-205ENST00000466192 METTL7AQ9H8H3 244 aa16.5■□□□□ 0.23
COL9A3-205ENST00000466192 VDAC3Q9Y277 283 aa16.5■□□□□ 0.23
COL9A3-205ENST00000466192 TNFSF12-TNFSF13A0A0A6YY99 330 aa16.5■□□□□ 0.23
COL9A3-205ENST00000466192 ITGA10O75578 1167 aa16.5■□□□□ 0.23
COL9A3-205ENST00000466192 GAAP10253 952 aa16.5■□□□□ 0.23
COL9A3-205ENST00000466192 F8A1P23610 371 aa16.5■□□□□ 0.23
COL9A3-205ENST00000466192 FOLR3P41439 243 aa16.5■□□□□ 0.23
COL9A3-205ENST00000466192 ZNF800Q2TB10 664 aaPredicted RBP eCLIP16.5■□□□□ 0.232e-6■■■□□ 15.5
COL9A3-205ENST00000466192 FAM27D1Q5T7N8 215 aa16.5■□□□□ 0.23
COL9A3-205ENST00000466192 LINC01590Q5TEZ4 76 aa16.5■□□□□ 0.23
COL9A3-205ENST00000466192 OR11G2Q8NGC1 345 aa16.5■□□□□ 0.23
COL9A3-205ENST00000466192 STK35Q8TDR2 534 aa16.5■□□□□ 0.23
COL9A3-205ENST00000466192 ALG12Q9BV10 488 aa16.5■□□□□ 0.23
COL9A3-205ENST00000466192 STRADBQ9C0K7 418 aa16.5■□□□□ 0.23
COL9A3-205ENST00000466192 PPP4R1LQ9P1A2 415 aa16.5■□□□□ 0.23
COL9A3-205ENST00000466192 COPS3Q9UNS2 423 aa16.5■□□□□ 0.23
COL9A3-205ENST00000466192 PCDHGB7Q9Y5F8 929 aa16.5■□□□□ 0.23
COL9A3-205ENST00000466192 C11orf98E9PRG8 122 aa16.49■□□□□ 0.23
COL9A3-205ENST00000466192 H7C1C5 153 aa16.49■□□□□ 0.23
COL9A3-205ENST00000466192 GLCEO94923 617 aa16.49■□□□□ 0.23
COL9A3-205ENST00000466192 GRPRP30550 384 aa16.49■□□□□ 0.23
COL9A3-205ENST00000466192 EIF2B2P49770 351 aaKnown RBP16.49■□□□□ 0.23
COL9A3-205ENST00000466192 LCN6P62502 163 aa16.49■□□□□ 0.23
COL9A3-205ENST00000466192 ACTA2P62736 377 aa16.49■□□□□ 0.23
COL9A3-205ENST00000466192 ACTG2P63267 376 aa16.49■□□□□ 0.23
COL9A3-205ENST00000466192 MADCAM1Q13477 382 aa16.49■□□□□ 0.23
COL9A3-205ENST00000466192 KRR1Q13601 381 aaKnown RBP16.49■□□□□ 0.23
COL9A3-205ENST00000466192 IL10RAQ13651 578 aa16.49■□□□□ 0.23
COL9A3-205ENST00000466192 INPP5JQ15735 1006 aaPredicted RBP16.49■□□□□ 0.23
COL9A3-205ENST00000466192 EXT1Q16394 746 aa16.49■□□□□ 0.23
COL9A3-205ENST00000466192 SGCBQ16585 318 aa16.49■□□□□ 0.23
COL9A3-205ENST00000466192 EMC4Q5J8M3 183 aa16.49■□□□□ 0.23
COL9A3-205ENST00000466192 FAM131AQ6UXB0 335 aa16.49■□□□□ 0.23
COL9A3-205ENST00000466192 ZNF511Q8NB15 262 aa16.49■□□□□ 0.23
COL9A3-205ENST00000466192 PGLYRP3Q96LB9 341 aa16.49■□□□□ 0.23
COL9A3-205ENST00000466192 SP140LQ9H930 580 aa16.49■□□□□ 0.23
COL9A3-205ENST00000466192 GNG8Q9UK08 70 aa16.49■□□□□ 0.23
COL9A3-205ENST00000466192 TRAPPC4Q9Y296 219 aa16.49■□□□□ 0.23
COL9A3-205ENST00000466192 WIF1Q9Y5W5 379 aa16.49■□□□□ 0.23
COL9A3-205ENST00000466192 DLGAP3O95886 979 aa16.48■□□□□ 0.23
COL9A3-205ENST00000466192 GSTT2P0CG29 244 aa16.48■□□□□ 0.23
COL9A3-205ENST00000466192 GSTT2BP0CG30 244 aa16.48■□□□□ 0.23
COL9A3-205ENST00000466192 CASP3P42574 277 aa16.48■□□□□ 0.23
COL9A3-205ENST00000466192 SLC25A1P53007 311 aa16.48■□□□□ 0.23
COL9A3-205ENST00000466192 DLX5P56178 289 aa16.48■□□□□ 0.23
COL9A3-205ENST00000466192 DMKNQ6E0U4 476 aaPredicted RBP16.48■□□□□ 0.23
COL9A3-205ENST00000466192 TIPARPQ7Z3E1 657 aaKnown RBP16.48■□□□□ 0.23
COL9A3-205ENST00000466192 ABHD4Q8TB40 342 aa16.48■□□□□ 0.23
COL9A3-205ENST00000466192 GHSRQ92847 366 aa16.48■□□□□ 0.23
COL9A3-205ENST00000466192 PELI1Q96FA3 418 aa16.48■□□□□ 0.23
COL9A3-205ENST00000466192 ATF6BQ99941 703 aa16.48■□□□□ 0.23
COL9A3-205ENST00000466192 SRA1Q9HD15 236 aaKnown RBP16.48■□□□□ 0.23
COL9A3-205ENST00000466192 PISDQ9UG56 409 aa16.48■□□□□ 0.23
COL9A3-205ENST00000466192 PADI1Q9ULC6 663 aa16.48■□□□□ 0.23
COL9A3-205ENST00000466192 KNTC1P50748 2209 aa16.48■□□□□ 0.23
COL9A3-205ENST00000466192 A0A1W2PRG6 482 aa16.48■□□□□ 0.23
COL9A3-205ENST00000466192 FABP12A6NFH5 140 aa16.48■□□□□ 0.23
COL9A3-205ENST00000466192 MASP2O00187 686 aa16.48■□□□□ 0.23
COL9A3-205ENST00000466192 DCTN6O00399 190 aa16.48■□□□□ 0.23
COL9A3-205ENST00000466192 AHSA1O95433 338 aa16.48■□□□□ 0.23
COL9A3-205ENST00000466192 ZNF806P0C7X5 589 aa16.48■□□□□ 0.23
COL9A3-205ENST00000466192 SHC1P29353 583 aa16.48■□□□□ 0.23
COL9A3-205ENST00000466192 RPS18P62269 152 aaKnown RBP16.48■□□□□ 0.23
COL9A3-205ENST00000466192 FOXF1Q12946 379 aa16.48■□□□□ 0.23
COL9A3-205ENST00000466192 CEACAM19Q7Z692 300 aa16.48■□□□□ 0.23
COL9A3-205ENST00000466192 OR13C5Q8NGS8 318 aa16.48■□□□□ 0.23
COL9A3-205ENST00000466192 M1APQ8TC57 530 aa16.48■□□□□ 0.23
COL9A3-205ENST00000466192 NDEL1Q9GZM8 345 aa16.48■□□□□ 0.23
COL9A3-205ENST00000466192 RNF32Q9H0A6 362 aa16.48■□□□□ 0.23
COL9A3-205ENST00000466192 TIGARQ9NQ88 270 aa16.48■□□□□ 0.23
COL9A3-205ENST00000466192 ST6GALNAC2Q9UJ37 374 aa16.48■□□□□ 0.23
COL9A3-205ENST00000466192 IGLV3-32A0A0A0MS00 114 aa16.47■□□□□ 0.23
COL9A3-205ENST00000466192 SHISA8B8ZZ34 492 aa16.47■□□□□ 0.23
COL9A3-205ENST00000466192 FTCDNL1E5RQL4 147 aa16.47■□□□□ 0.23
COL9A3-205ENST00000466192 PSMD9O00233 223 aa16.47■□□□□ 0.23
COL9A3-205ENST00000466192 DXOO77932 396 aaKnown RBP16.47■□□□□ 0.23
COL9A3-205ENST00000466192 CD53P19397 219 aa16.47■□□□□ 0.23
COL9A3-205ENST00000466192 APOBEC1P41238 236 aaKnown RBP16.47■□□□□ 0.23
COL9A3-205ENST00000466192 BAK1Q16611 211 aa16.47■□□□□ 0.23
COL9A3-205ENST00000466192 CDONQ4KMG0 1287 aa16.47■□□□□ 0.23
COL9A3-205ENST00000466192 SLC6A19Q695T7 634 aa16.47■□□□□ 0.23
COL9A3-205ENST00000466192 GPR139Q6DWJ6 353 aa16.47■□□□□ 0.23
COL9A3-205ENST00000466192 NR2C2APQ86WQ0 139 aa16.47■□□□□ 0.23
COL9A3-205ENST00000466192 ARL5BQ96KC2 179 aa16.47■□□□□ 0.23
COL9A3-205ENST00000466192 SRRQ9GZT4 340 aa16.47■□□□□ 0.23
COL9A3-205ENST00000466192 ZNF160Q9HCG1 818 aa16.47■□□□□ 0.23
COL9A3-205ENST00000466192 ACOXLQ9NUZ1 547 aa16.47■□□□□ 0.23
COL9A3-205ENST00000466192 NCDNQ9UBB6 729 aa16.47■□□□□ 0.23
COL9A3-205ENST00000466192 CHCHD2Q9Y6H1 151 aaPredicted RBP16.47■□□□□ 0.23
COL9A3-205ENST00000466192 PCNX2A6NKB5 2137 aa16.47■□□□□ 0.23
COL9A3-205ENST00000466192 ETV2O00321 342 aaPredicted RBP16.47■□□□□ 0.23
COL9A3-205ENST00000466192 HPGDSO60760 199 aa16.47■□□□□ 0.23
COL9A3-205ENST00000466192 PTTG1O95997 202 aa16.47■□□□□ 0.23
COL9A3-205ENST00000466192 PLGP00747 810 aaPredicted RBP16.47■□□□□ 0.23
COL9A3-205ENST00000466192 IL11P20809 199 aa16.47■□□□□ 0.23
COL9A3-205ENST00000466192 AHCYP23526 432 aa16.47■□□□□ 0.23
COL9A3-205ENST00000466192 MSX1P28360 303 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms