RNA–Protein interactions for RNA: ENST00000428287.6

RIF1-203, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RIF1, Length 7,722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-203ENST00000428287 MRGPRX3Q96LB0 322 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 NECAB3Q96P71 396 aaPredicted RBP4.7□□□□□ -1.66
RIF1-203ENST00000428287 MNTQ99583 582 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 CHIAQ9BZP6 476 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 CHRNA9Q9UGM1 479 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 RNH1P13489 461 aaKnown RBP4.7□□□□□ -1.66
RIF1-203ENST00000428287 CASP9P55211 416 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 MRPS6P82932 125 aaKnown RBP4.7□□□□□ -1.66
RIF1-203ENST00000428287 FABP9Q0Z7S8 132 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 SLBPQ14493 270 aaKnown RBP eCLIP4.7□□□□□ -1.66
RIF1-203ENST00000428287 SGCAQ16586 387 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 DHRS11Q6UWP2 260 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 ARL14EPQ8N8R7 260 aaPredicted RBP4.7□□□□□ -1.66
RIF1-203ENST00000428287 ACOT4Q8N9L9 421 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 BEND2Q8NDZ0 799 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 OR13C8Q8NGS7 320 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 CDC26Q8NHZ8 85 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 LINC01599Q8WXQ3 324 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 CDC6Q99741 560 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 C2orf88Q9BSF0 95 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 OR10A4Q9H209 315 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 OR52D1Q9H346 318 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 AK6Q9Y3D8 172 aaKnown RBP4.7□□□□□ -1.66
RIF1-203ENST00000428287 ZFP37Q9Y6Q3 630 aaPredicted RBP4.7□□□□□ -1.66
RIF1-203ENST00000428287 A0A1W2PPE3 182 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 DAPL1A0PJW8 107 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 FAM86C2PA6NEL3 165 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 TMEM202A6NGA9 273 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 PRR23D1E9PI22 279 aaPredicted RBP4.7□□□□□ -1.66
RIF1-203ENST00000428287 CLEC3AO75596 197 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 PRR23D2P0DMB1 279 aaPredicted RBP4.7□□□□□ -1.66
RIF1-203ENST00000428287 SDHAP31040 664 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 GLP1RP43220 463 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 NPBWR1P48145 328 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 PRKXP51817 358 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 ZNF85Q03923 595 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 POU4F2Q12837 409 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 CRMP1Q14194 572 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 SFRP4Q6FHJ7 346 aaPredicted RBP4.7□□□□□ -1.66
RIF1-203ENST00000428287 SLC8B1Q6J4K2 584 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 OR4K14Q8NGD5 310 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 BBS10Q8TAM1 723 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 THRSPQ92748 146 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 GGACTQ9BVM4 153 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 TP53TG5Q9Y2B4 290 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 TBC1D3BA6NDS4 549 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 TBC1D3FA6NER0 549 aaPredicted RBP4.7□□□□□ -1.66
RIF1-203ENST00000428287 TMPRSS11DO60235 418 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 AKR7A3O95154 331 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 SLC34A2O95436 690 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 HMGN2P05204 90 aaKnown RBP4.7□□□□□ -1.66
RIF1-203ENST00000428287 VASPP50552 380 aaPredicted RBP4.7□□□□□ -1.66
RIF1-203ENST00000428287 CYCSP99999 105 aaKnown RBP4.7□□□□□ -1.66
RIF1-203ENST00000428287 LASP1Q14847 261 aaKnown RBP4.7□□□□□ -1.66
RIF1-203ENST00000428287 ZSWIM7Q19AV6 140 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 CLEC12AQ5QGZ9 265 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 TBC1D3GQ6DHY5 549 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 PLBD1Q6P4A8 553 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 TMEM71Q6P5X7 295 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 PNLDC1Q8NA58 520 aaKnown RBP4.7□□□□□ -1.66
RIF1-203ENST00000428287 GPRC5AQ8NFJ5 357 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 PTX4Q96A99 478 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 NMNAT2Q9BZQ4 307 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 MEPEQ9NQ76 525 aaPredicted RBP4.7□□□□□ -1.66
RIF1-203ENST00000428287 SPTBN4Q9H254 2564 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 ZNF292O60281 2723 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 LCMT2O60294 686 aaKnown RBP4.7□□□□□ -1.66
RIF1-203ENST00000428287 CTSLP07711 333 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 NR2F1P10589 423 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 PPICP45877 212 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 CENPAP49450 140 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 SPCS3P61009 180 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 SLC7A9P82251 487 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 NDUFAF6Q330K2 333 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 EXOSC6Q5RKV6 272 aaKnown RBP4.7□□□□□ -1.66
RIF1-203ENST00000428287 MRM1Q6IN84 353 aaKnown RBP4.7□□□□□ -1.66
RIF1-203ENST00000428287 SYT9Q86SS6 491 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 DND1Q8IYX4 353 aaKnown RBP4.7□□□□□ -1.66
RIF1-203ENST00000428287 TMEM99Q8N816 258 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 CCDC74AQ96AQ1 378 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 ZNF514Q96K75 400 aaPredicted RBP4.7□□□□□ -1.66
RIF1-203ENST00000428287 TMPRSS5Q9H3S3 457 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 CES1P1Q9UKY3 287 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 EDARQ9UNE0 448 aa4.7□□□□□ -1.66
RIF1-203ENST00000428287 OR6C74A6NCV1 312 aa4.69□□□□□ -1.66
RIF1-203ENST00000428287 OR4C45A6NMZ5 311 aa4.69□□□□□ -1.66
RIF1-203ENST00000428287 P2RX6O15547 441 aa4.69□□□□□ -1.66
RIF1-203ENST00000428287 LILRB5O75023 590 aa4.69□□□□□ -1.66
RIF1-203ENST00000428287 RCBTB2O95199 551 aa4.69□□□□□ -1.66
RIF1-203ENST00000428287 RPS4Y1P22090 263 aaKnown RBP4.69□□□□□ -1.66
RIF1-203ENST00000428287 CDK2P24941 298 aa4.69□□□□□ -1.66
RIF1-203ENST00000428287 LUMP51884 338 aaPredicted RBP4.69□□□□□ -1.66
RIF1-203ENST00000428287 CAPZA1P52907 286 aa4.69□□□□□ -1.66
RIF1-203ENST00000428287 UBE2MP61081 183 aaKnown RBP4.69□□□□□ -1.66
RIF1-203ENST00000428287 BLOC1S1P78537 153 aa4.69□□□□□ -1.66
RIF1-203ENST00000428287 FHL1Q13642 323 aa4.69□□□□□ -1.66
RIF1-203ENST00000428287 NXPE4Q6UWF7 544 aa4.69□□□□□ -1.66
RIF1-203ENST00000428287 GDPD4Q6W3E5 623 aa4.69□□□□□ -1.66
RIF1-203ENST00000428287 ADAMTS17Q8TE56 1095 aa4.69□□□□□ -1.66
RIF1-203ENST00000428287 ZNF689Q96CS4 500 aaPredicted RBP4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms