RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 PAX2Q02962 417 aa7.15□□□□□ -1.26
HMGB1P39-201ENST00000366304 TSTQ16762 297 aaKnown RBP7.15□□□□□ -1.26
HMGB1P39-201ENST00000366304 DEFB112Q30KQ8 113 aa7.15□□□□□ -1.26
HMGB1P39-201ENST00000366304 ARHGAP11BQ3KRB8 267 aa7.15□□□□□ -1.26
HMGB1P39-201ENST00000366304 LIPMQ5VYY2 423 aa7.15□□□□□ -1.26
HMGB1P39-201ENST00000366304 REP15Q6BDI9 236 aa7.15□□□□□ -1.26
HMGB1P39-201ENST00000366304 FIP1L1Q6UN15 594 aaKnown RBP7.15□□□□□ -1.26
HMGB1P39-201ENST00000366304 FRRS1Q6ZNA5 592 aa7.15□□□□□ -1.26
HMGB1P39-201ENST00000366304 TMEM123Q8N131 208 aa7.15□□□□□ -1.26
HMGB1P39-201ENST00000366304 Q8N3U1 123 aa7.15□□□□□ -1.26
HMGB1P39-201ENST00000366304 OR56A1Q8NGH5 318 aa7.15□□□□□ -1.26
HMGB1P39-201ENST00000366304 OR4F5Q8NH21 305 aa7.15□□□□□ -1.26
HMGB1P39-201ENST00000366304 LINC01006Q8NI28 216 aa7.15□□□□□ -1.26
HMGB1P39-201ENST00000366304 MRAPQ8TCY5 172 aa7.15□□□□□ -1.26
HMGB1P39-201ENST00000366304 DCAKDQ8WVC6 231 aa7.15□□□□□ -1.26
HMGB1P39-201ENST00000366304 DDIT4LQ96D03 193 aa7.15□□□□□ -1.26
HMGB1P39-201ENST00000366304 GAL3ST1Q99999 423 aa7.15□□□□□ -1.26
HMGB1P39-201ENST00000366304 MS4A7Q9GZW8 240 aaPredicted RBP7.15□□□□□ -1.26
HMGB1P39-201ENST00000366304 PIF1Q9H611 641 aa7.15□□□□□ -1.26
HMGB1P39-201ENST00000366304 C1orf109Q9NX04 203 aa7.15□□□□□ -1.26
HMGB1P39-201ENST00000366304 NINJ2Q9NZG7 142 aa7.15□□□□□ -1.26
HMGB1P39-201ENST00000366304 B3GAT1Q9P2W7 334 aa7.15□□□□□ -1.26
HMGB1P39-201ENST00000366304 TESQ9UGI8 421 aaKnown RBP7.15□□□□□ -1.26
HMGB1P39-201ENST00000366304 ATP6V1HQ9UI12 483 aa7.15□□□□□ -1.26
HMGB1P39-201ENST00000366304 DNAH9Q9NYC9 4486 aa7.15□□□□□ -1.27
HMGB1P39-201ENST00000366304 IGLV3-9A0A075B6K5 115 aa7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 A0A1B0GUS0 222 aa7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 CLDN25C9JDP6 229 aa7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 SLC43A1O75387 559 aa7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 STX11O75558 287 aa7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 CLPXO76031 633 aa7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 UBOX5O94941 541 aa7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 CHRM4P08173 479 aa7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 CD79AP11912 226 aa7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 ATP5F1P24539 256 aaPredicted RBP7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 FKBP2P26885 142 aaKnown RBP7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 GIPRP48546 466 aa7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 ETF1P62495 437 aaKnown RBP7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 RPL38P63173 70 aaKnown RBP7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 HBA1P69905 142 aa7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 PAX8Q06710 450 aa7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 C2orf54Q08AI8 447 aa7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 HLXQ14774 488 aaPredicted RBP7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 RAB39AQ14964 217 aa7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 NKPD1Q17RQ9 610 aa7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 GSG1Q2KHT4 349 aa7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 SPDYE7PQ495Y7 208 aa7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 ZNF362Q5T0B9 420 aaPredicted RBP7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 TMEM225Q6GV28 225 aa7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 Q6ZS46 218 aa7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 ARFGAP2Q8N6H7 521 aa7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 KRTCAP2Q8N6L1 136 aa7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 CCNYL1Q8N7R7 359 aa7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 IL17RDQ8NFM7 739 aa7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 OR5P2Q8WZ92 322 aa7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 PMM1Q92871 262 aa7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 FAM210AQ96ND0 272 aa7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 OR2M2Q96R28 347 aa7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 PAFAH2Q99487 392 aa7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 IQCGQ9H095 443 aaKnown RBP7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 KCNF1Q9H3M0 494 aa7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 PRDM13Q9H4Q3 707 aa7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 MOV10Q9HCE1 1003 aaKnown RBP7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 EXOSC3Q9NQT5 275 aaKnown RBP7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 TENM2Q9NT68 2774 aa7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 NKIRAS2Q9NYR9 191 aa7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 DSPPQ9NZW4 1301 aa7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 EMCNQ9ULC0 261 aa7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 NOTCH3Q9UM47 2321 aa7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 STK38LQ9Y2H1 464 aa7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 POLR3KQ9Y2Y1 108 aaPredicted RBP7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 V9GYY5 206 aaPredicted RBP7.14□□□□□ -1.27
HMGB1P39-201ENST00000366304 ZNF99A8MXY4 864 aaPredicted RBP7.13□□□□□ -1.27
HMGB1P39-201ENST00000366304 SRRM5B3KS81 715 aa7.13□□□□□ -1.27
HMGB1P39-201ENST00000366304 FTCDNL1E5RQL4 147 aa7.13□□□□□ -1.27
HMGB1P39-201ENST00000366304 G3V2L1 256 aa7.13□□□□□ -1.27
HMGB1P39-201ENST00000366304 LSM1O15116 133 aaKnown RBP7.13□□□□□ -1.27
HMGB1P39-201ENST00000366304 FRS3O43559 492 aa7.13□□□□□ -1.27
HMGB1P39-201ENST00000366304 SCN2BO60939 215 aa7.13□□□□□ -1.27
HMGB1P39-201ENST00000366304 IGHMP01871 453 aa7.13□□□□□ -1.27
HMGB1P39-201ENST00000366304 GPIP06744 558 aa7.13□□□□□ -1.27
HMGB1P39-201ENST00000366304 LINC00032P0C843 101 aa7.13□□□□□ -1.27
HMGB1P39-201ENST00000366304 CCL2P13500 99 aa7.13□□□□□ -1.27
HMGB1P39-201ENST00000366304 ZNF250P15622 560 aa7.13□□□□□ -1.27
HMGB1P39-201ENST00000366304 TAC1P20366 129 aa7.13□□□□□ -1.27
HMGB1P39-201ENST00000366304 MATN1P21941 496 aa7.13□□□□□ -1.27
HMGB1P39-201ENST00000366304 CASQ1P31415 396 aa7.13□□□□□ -1.27
HMGB1P39-201ENST00000366304 PTDSS1P48651 473 aaKnown RBP7.13□□□□□ -1.27
HMGB1P39-201ENST00000366304 LOXL3P58215 753 aa7.13□□□□□ -1.27
HMGB1P39-201ENST00000366304 KCNJ10P78508 379 aa7.13□□□□□ -1.27
HMGB1P39-201ENST00000366304 GLO1Q04760 184 aa7.13□□□□□ -1.27
HMGB1P39-201ENST00000366304 PTGR1Q14914 329 aa7.13□□□□□ -1.27
HMGB1P39-201ENST00000366304 TRMT5Q32P41 509 aaKnown RBP7.13□□□□□ -1.27
HMGB1P39-201ENST00000366304 GKAP1Q5VSY0 366 aaPredicted RBP7.13□□□□□ -1.27
HMGB1P39-201ENST00000366304 PRAMEF8Q5VWM4 474 aa7.13□□□□□ -1.27
HMGB1P39-201ENST00000366304 PRAMEF7Q5VXH5 474 aa7.13□□□□□ -1.27
HMGB1P39-201ENST00000366304 TMEM154Q6P9G4 183 aa7.13□□□□□ -1.27
HMGB1P39-201ENST00000366304 BRD3OSQ6XYD6 125 aa7.13□□□□□ -1.27
HMGB1P39-201ENST00000366304 FRMD7Q6ZUT3 714 aa7.13□□□□□ -1.27
HMGB1P39-201ENST00000366304 C6orf120Q7Z4R8 191 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms