RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 HRASLS5Q96KN8 279 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 NXF5Q9H1B4 397 aaKnown RBP9.17□□□□□ -0.94
COL6A3-201ENST00000295550 EXOSC3Q9NQT5 275 aaKnown RBP9.17□□□□□ -0.94
COL6A3-201ENST00000295550 MTCH1Q9NZJ7 389 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 TMEM212A6NML5 194 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 TUSC2O75896 110 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 SULT1C4O75897 302 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 MMP2P08253 660 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 ACP2P11117 423 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 RPS25P62851 125 aaKnown RBP9.17□□□□□ -0.94
COL6A3-201ENST00000295550 GRM7Q14831 915 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 OR4F15Q8NGB8 312 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 ADAMTS18Q8TE60 1221 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 ADAMTS14Q8WXS8 1223 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 DDX31Q9H8H2 851 aaKnown RBP9.17□□□□□ -0.94
COL6A3-201ENST00000295550 SLCO3A1Q9UIG8 710 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 UMAD1C9J7I0 102 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 GPR39O43194 453 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 ZNF888P0CJ79 500 aaPredicted RBP9.17□□□□□ -0.94
COL6A3-201ENST00000295550 BIDP55957 195 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 ZNF266Q14584 549 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 H3F3CQ6NXT2 135 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 ZNRF4Q8WWF5 429 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 KCTD12Q96CX2 325 aaKnown RBP9.17□□□□□ -0.94
COL6A3-201ENST00000295550 IL17FQ96PD4 163 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 PIGMQ9H3S5 423 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 EGLN3Q9H6Z9 239 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 LTBP4Q8N2S1 1624 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 PAPPA2Q9BXP8 1791 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 AQP9O43315 295 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 C4orf17Q53FE4 359 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 IL34Q6ZMJ4 242 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 L3MBTL4Q8NA19 623 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 PDE7BQ9NP56 450 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 A3GALT2U3KPV4 340 aa9.17□□□□□ -0.94
COL6A3-201ENST00000295550 PDZK1IP1Q13113 114 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 DEFB119Q8N690 84 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 GGHQ92820 318 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 CPNE4Q96A23 557 aaPredicted RBP9.16□□□□□ -0.94
COL6A3-201ENST00000295550 I6L893 689 aaPredicted RBP9.16□□□□□ -0.94
COL6A3-201ENST00000295550 DSC1Q08554 894 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 CDONQ4KMG0 1287 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 ZNF836Q6ZNA1 936 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 NLGN4XQ8N0W4 816 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 OR5L1Q8NGL2 311 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 OR2T27Q8NH04 317 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 YIPF5Q969M3 257 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 MAP3K3Q99759 626 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 ZNF251Q9BRH9 671 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 H0YIV9 168 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 PAX6P26367 422 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 PCSK6P29122 969 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 TRHRP34981 398 aaPredicted RBP9.16□□□□□ -0.94
COL6A3-201ENST00000295550 CCR6P51684 374 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 FAM96BQ9Y3D0 163 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 A0A0U1RQS6 177 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 OR10J4P0C629 311 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 OR13C7P0DN81 318 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 HOXB2P14652 356 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 AADACP22760 399 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 HTR3AP46098 478 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 NDUFAF7Q7L592 441 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 OR4A16Q8NH70 328 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 MS4A4AQ96JQ5 239 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 OR14J1Q9UGF5 321 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 USP22Q9UPT9 525 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 OR2A25A4D2G3 310 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 YY2O15391 372 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 TGOLN2O43493 480 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 PDGFAP04085 211 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 PSMB1P20618 241 aaKnown RBP9.16□□□□□ -0.94
COL6A3-201ENST00000295550 EPHA4P54764 986 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 SYT6Q5T7P8 510 aaPredicted RBP9.16□□□□□ -0.94
COL6A3-201ENST00000295550 TMEM207Q6UWW9 146 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 SLC51BQ86UW2 128 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 SIAH3Q8IW03 269 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 PSMF1Q92530 271 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 SLCO4A1Q96BD0 722 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 PEX11GQ96HA9 241 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 SAP130Q9H0E3 1048 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 ETV7Q9Y603 341 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 SEC61A1P61619 476 aaKnown RBP9.16□□□□□ -0.94
COL6A3-201ENST00000295550 GPM6BQ13491 265 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 HSD11B1LQ7Z5J1 315 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 WDR81Q562E7 1941 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 F6UZH7 168 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 RTCAO00442 366 aaKnown RBP9.16□□□□□ -0.94
COL6A3-201ENST00000295550 TERTO14746 1132 aaKnown RBP9.16□□□□□ -0.94
COL6A3-201ENST00000295550 HNRNPA2B1P22626 353 aaKnown RBP9.16□□□□□ -0.94
COL6A3-201ENST00000295550 PIGAP37287 484 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 SLC7A9P82251 487 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 DLEU7Q6UYE1 221 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 TMUB2Q71RG4 321 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 OR6V1Q8N148 313 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 DMBX1Q8NFW5 382 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 ZNF596Q8TC21 504 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 LIN7BQ9HAP6 207 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 TO15178 435 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 ARRB2P32121 409 aa9.16□□□□□ -0.94
COL6A3-201ENST00000295550 ETFRF1Q6IPR1 90 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms