RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 NCR1O76036 304 aa17.69■□□□□ 0.42
UPF1-201ENST00000262803 ABHD16AO95870 558 aa17.69■□□□□ 0.42
UPF1-201ENST00000262803 FPR3P25089 353 aa17.69■□□□□ 0.42
UPF1-201ENST00000262803 LGALS4P56470 323 aa17.69■□□□□ 0.42
UPF1-201ENST00000262803 CAMK2BQ13554 666 aa17.69■□□□□ 0.42
UPF1-201ENST00000262803 GNG12Q9UBI6 72 aa17.69■□□□□ 0.42
UPF1-201ENST00000262803 PRAMEF27A3QJZ7 478 aa17.69■□□□□ 0.42
UPF1-201ENST00000262803 ZNF891A8MT65 544 aaPredicted RBP17.69■□□□□ 0.42
UPF1-201ENST00000262803 MSTNO14793 375 aa17.69■□□□□ 0.42
UPF1-201ENST00000262803 SPINT2O43291 252 aa17.69■□□□□ 0.42
UPF1-201ENST00000262803 PIGAP37287 484 aa17.69■□□□□ 0.42
UPF1-201ENST00000262803 MTNR1BP49286 362 aa17.69■□□□□ 0.42
UPF1-201ENST00000262803 DUSP6Q16828 381 aa17.69■□□□□ 0.42
UPF1-201ENST00000262803 HYAL4Q2M3T9 481 aa17.69■□□□□ 0.42
UPF1-201ENST00000262803 KRBOX4Q5JUW0 171 aa17.69■□□□□ 0.42
UPF1-201ENST00000262803 PRAMEF9Q5VWM5 478 aa17.69■□□□□ 0.42
UPF1-201ENST00000262803 ZC3HAV1Q7Z2W4 902 aaKnown RBP17.69■□□□□ 0.42
UPF1-201ENST00000262803 GRINAQ7Z429 371 aa17.69■□□□□ 0.42
UPF1-201ENST00000262803 DUSP19Q8WTR2 217 aa17.69■□□□□ 0.42
UPF1-201ENST00000262803 OPA3Q9H6K4 179 aa17.69■□□□□ 0.42
UPF1-201ENST00000262803 GMDSO60547 372 aa17.68■□□□□ 0.42
UPF1-201ENST00000262803 HTR2CP28335 458 aa17.68■□□□□ 0.42
UPF1-201ENST00000262803 RPS25P62851 125 aaKnown RBP17.68■□□□□ 0.42
UPF1-201ENST00000262803 SPOCK1Q08629 439 aa17.68■□□□□ 0.42
UPF1-201ENST00000262803 RBMS2Q15434 407 aaKnown RBP17.68■□□□□ 0.42
UPF1-201ENST00000262803 PLK5Q496M5 336 aa17.68■□□□□ 0.42
UPF1-201ENST00000262803 AADACL3Q5VUY0 350 aa17.68■□□□□ 0.42
UPF1-201ENST00000262803 KMT5CQ86Y97 462 aa17.68■□□□□ 0.42
UPF1-201ENST00000262803 OR6V1Q8N148 313 aa17.68■□□□□ 0.42
UPF1-201ENST00000262803 GJC3Q8NFK1 279 aa17.68■□□□□ 0.42
UPF1-201ENST00000262803 CLDN6P56747 220 aa17.68■□□□□ 0.42
UPF1-201ENST00000262803 IKZF1Q13422 519 aa17.68■□□□□ 0.42
UPF1-201ENST00000262803 XKR7Q5GH72 579 aa17.68■□□□□ 0.42
UPF1-201ENST00000262803 AFMIDQ63HM1 303 aa17.68■□□□□ 0.42
UPF1-201ENST00000262803 TMEM64Q6YI46 380 aa17.68■□□□□ 0.42
UPF1-201ENST00000262803 ANKRD33Q7Z3H0 272 aa17.68■□□□□ 0.42
UPF1-201ENST00000262803 LAX1Q8IWV1 398 aa17.68■□□□□ 0.42
UPF1-201ENST00000262803 MED20Q9H944 212 aa17.68■□□□□ 0.42
UPF1-201ENST00000262803 CA5BQ9Y2D0 317 aa17.68■□□□□ 0.42
UPF1-201ENST00000262803 COL16A1Q07092 1604 aaPredicted RBP17.68■□□□□ 0.42
UPF1-201ENST00000262803 E9PI62 339 aa17.68■□□□□ 0.42
UPF1-201ENST00000262803 SCG5P05408 212 aa17.68■□□□□ 0.42
UPF1-201ENST00000262803 HOXD12P35452 270 aa17.68■□□□□ 0.42
UPF1-201ENST00000262803 GABREP78334 506 aa17.68■□□□□ 0.42
UPF1-201ENST00000262803 ERV3-1Q14264 604 aa17.68■□□□□ 0.42
UPF1-201ENST00000262803 YIF1BQ5BJH7 314 aa17.68■□□□□ 0.42
UPF1-201ENST00000262803 RBMS3Q6XE24 437 aaKnown RBP17.68■□□□□ 0.42
UPF1-201ENST00000262803 B3GLCTQ6Y288 498 aa17.68■□□□□ 0.42
UPF1-201ENST00000262803 BPIFB2Q8N4F0 458 aa17.68■□□□□ 0.42
UPF1-201ENST00000262803 SUMF2Q8NBJ7 301 aa17.68■□□□□ 0.42
UPF1-201ENST00000262803 NIPSNAP1Q9BPW8 284 aa17.68■□□□□ 0.42
UPF1-201ENST00000262803 OR14J1Q9UGF5 321 aa17.68■□□□□ 0.42
UPF1-201ENST00000262803 RCE1Q9Y256 329 aa17.68■□□□□ 0.42
UPF1-201ENST00000262803 KLF13Q9Y2Y9 288 aaPredicted RBP17.68■□□□□ 0.42
UPF1-201ENST00000262803 OR4A16Q8NH70 328 aa17.68■□□□□ 0.42
UPF1-201ENST00000262803 FOXN4Q96NZ1 517 aa17.68■□□□□ 0.42
UPF1-201ENST00000262803 KATNB1Q9BVA0 655 aa17.68■□□□□ 0.42
UPF1-201ENST00000262803 PFN3P60673 137 aa17.68■□□□□ 0.42
UPF1-201ENST00000262803 NKX6-1P78426 367 aaPredicted RBP17.68■□□□□ 0.42
UPF1-201ENST00000262803 LILRA3Q8N6C8 439 aaPredicted RBP17.68■□□□□ 0.42
UPF1-201ENST00000262803 DMBX1Q8NFW5 382 aa17.68■□□□□ 0.42
UPF1-201ENST00000262803 CORO2AQ92828 525 aa17.68■□□□□ 0.42
UPF1-201ENST00000262803 NAGAP17050 411 aa17.67■□□□□ 0.42
UPF1-201ENST00000262803 HMGN3Q15651 99 aa17.67■□□□□ 0.42
UPF1-201ENST00000262803 OR51A2Q8NGJ7 313 aa17.67■□□□□ 0.42
UPF1-201ENST00000262803 GOT1L1Q8NHS2 421 aaPredicted RBP17.67■□□□□ 0.42
UPF1-201ENST00000262803 RAB3CQ96E17 227 aa17.67■□□□□ 0.42
UPF1-201ENST00000262803 OR5M11Q96RB7 305 aa17.67■□□□□ 0.42
UPF1-201ENST00000262803 PSD2Q9BQI7 771 aa17.67■□□□□ 0.42
UPF1-201ENST00000262803 SPACA1Q9HBV2 294 aa17.67■□□□□ 0.42
UPF1-201ENST00000262803 TGM6O95932 706 aa17.67■□□□□ 0.42
UPF1-201ENST00000262803 F13BP05160 661 aa17.67■□□□□ 0.42
UPF1-201ENST00000262803 RPS18P62269 152 aaKnown RBP17.67■□□□□ 0.42
UPF1-201ENST00000262803 SIRPAP78324 504 aa17.67■□□□□ 0.42
UPF1-201ENST00000262803 ZNF585AQ6P3V2 769 aa17.67■□□□□ 0.42
UPF1-201ENST00000262803 MED25Q71SY5 747 aa17.67■□□□□ 0.42
UPF1-201ENST00000262803 FCRLAQ7L513 359 aa17.67■□□□□ 0.42
UPF1-201ENST00000262803 ZNF808Q8N4W9 903 aaPredicted RBP17.67■□□□□ 0.42
UPF1-201ENST00000262803 APH1AQ96BI3 265 aa17.67■□□□□ 0.42
UPF1-201ENST00000262803 ZNF582Q96NG8 517 aaPredicted RBP17.67■□□□□ 0.42
UPF1-201ENST00000262803 MRPS28Q9Y2Q9 187 aaKnown RBP17.67■□□□□ 0.42
UPF1-201ENST00000262803 CXorf51AA0A1B0GTR3 108 aa17.67■□□□□ 0.42
UPF1-201ENST00000262803 F6UZH7 168 aa17.67■□□□□ 0.42
UPF1-201ENST00000262803 HOXA1P49639 335 aaPredicted RBP17.67■□□□□ 0.42
UPF1-201ENST00000262803 ABHD17CQ6PCB6 329 aa17.67■□□□□ 0.42
UPF1-201ENST00000262803 FAM111BQ6SJ93 734 aa17.67■□□□□ 0.42
UPF1-201ENST00000262803 SLC22A25Q6T423 547 aa17.67■□□□□ 0.42
UPF1-201ENST00000262803 ZNF813Q6ZN06 617 aa17.67■□□□□ 0.42
UPF1-201ENST00000262803 TDHQ8IZJ6 230 aa17.67■□□□□ 0.42
UPF1-201ENST00000262803 MOB1AQ9H8S9 216 aa17.67■□□□□ 0.42
UPF1-201ENST00000262803 ELAVL4P26378 380 aaKnown RBP17.67■□□□□ 0.42
UPF1-201ENST00000262803 HLA-DMAP28067 261 aa17.67■□□□□ 0.42
UPF1-201ENST00000262803 DPTQ07507 201 aa17.67■□□□□ 0.42
UPF1-201ENST00000262803 STEAP3Q658P3 488 aa17.67■□□□□ 0.42
UPF1-201ENST00000262803 C19orf43Q9BQ61 176 aa17.67■□□□□ 0.42
UPF1-201ENST00000262803 SIAEQ9HAT2 523 aa17.67■□□□□ 0.42
UPF1-201ENST00000262803 EVI2BP34910 448 aa17.66■□□□□ 0.42
UPF1-201ENST00000262803 LRRC26Q2I0M4 334 aa17.66■□□□□ 0.42
UPF1-201ENST00000262803 CCSMST1Q4G0I0 132 aa17.66■□□□□ 0.42
UPF1-201ENST00000262803 C18orf63Q68DL7 685 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms