RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 IGFL2Q6UWQ7 119 aa18.04■□□□□ 0.48
CLN3-250ENST00000636839 PRSS48Q7RTY5 328 aa18.04■□□□□ 0.48
CLN3-250ENST00000636839 SLC43A2Q8N370 569 aa18.04■□□□□ 0.48
CLN3-250ENST00000636839 STX19Q8N4C7 294 aa18.04■□□□□ 0.48
CLN3-250ENST00000636839 OR6S1Q8NH40 331 aa18.04■□□□□ 0.48
CLN3-250ENST00000636839 LGALS12Q96DT0 336 aa18.04■□□□□ 0.48
CLN3-250ENST00000636839 RNFT2Q96EX2 444 aa18.04■□□□□ 0.48
CLN3-250ENST00000636839 SCMH1Q96GD3 660 aa18.04■□□□□ 0.48
CLN3-250ENST00000636839 SFXN2Q96NB2 322 aa18.04■□□□□ 0.48
CLN3-250ENST00000636839 TSSK2Q96PF2 358 aa18.04■□□□□ 0.48
CLN3-250ENST00000636839 CHST11Q9NPF2 352 aa18.04■□□□□ 0.48
CLN3-250ENST00000636839 INIPQ9NRY2 104 aa18.04■□□□□ 0.48
CLN3-250ENST00000636839 SPIN1Q9Y657 262 aaPredicted RBP18.04■□□□□ 0.48
CLN3-250ENST00000636839 TNRC6AQ8NDV7 1962 aaKnown RBP18.04■□□□□ 0.48
CLN3-250ENST00000636839 K7EM74 188 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 SULT2B1O00204 365 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 TNFSF11O14788 317 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 GLSO94925 669 aaPredicted RBP18.03■□□□□ 0.48
CLN3-250ENST00000636839 INMTO95050 263 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 ZNF17P17021 662 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 ACVR2AP27037 513 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 GTF2E2P29084 291 aaKnown RBP18.03■□□□□ 0.48
CLN3-250ENST00000636839 P2RY4P51582 365 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 SUCLG1P53597 346 aaKnown RBP18.03■□□□□ 0.48
CLN3-250ENST00000636839 MELKQ14680 651 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 GTF2IRD2BQ6EKJ0 949 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 TMPPEQ6ZT21 453 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 GTF2IRD2Q86UP8 949 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 UBQLNLQ8IYU4 475 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 SMAP2Q8WU79 429 aaPredicted RBP18.03■□□□□ 0.48
CLN3-250ENST00000636839 SLC25A43Q8WUT9 341 aaPredicted RBP18.03■□□□□ 0.48
CLN3-250ENST00000636839 MYDGFQ969H8 173 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 OR2B2Q9GZK3 357 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 BATF3Q9NR55 127 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 ALKBH4Q9NXW9 302 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 GRHPRQ9UBQ7 328 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 CLEC2DQ9UHP7 191 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 SNX5Q9Y5X3 404 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 IGHV3-15A0A0B4J1V0 119 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 FAM171A2A8MVW0 826 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 KLRC4-KLRK1H3BQV0 150 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 ITGB2P05107 769 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 SDHAP31040 664 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 MTNR1AP48039 350 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 SLC16A1P53985 500 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 GFRA1P56159 465 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 CLDN15P56746 228 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 RAC1P63000 192 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 RUNX1T1Q06455 604 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 PUDPQ08623 228 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 ANKDD1AQ495B1 522 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 LEG1Q6P5S2 330 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 PAQR6Q6TCH4 344 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 OR4F15Q8NGB8 312 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 OR52I1Q8NGK6 324 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 KISS1RQ969F8 398 aaPredicted RBP18.03■□□□□ 0.48
CLN3-250ENST00000636839 MIB2Q96AX9 1013 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 TXNDC15Q96J42 360 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 SLC6A15Q9H2J7 730 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 B3GAT1Q9P2W7 334 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 CORINQ9Y5Q5 1042 aa18.03■□□□□ 0.48
CLN3-250ENST00000636839 CCDC182A6NF36 153 aa18.02■□□□□ 0.48
CLN3-250ENST00000636839 EFCAB10A6NFE3 127 aa18.02■□□□□ 0.48
CLN3-250ENST00000636839 SEC14L5O43304 696 aa18.02■□□□□ 0.48
CLN3-250ENST00000636839 IFNGP01579 166 aa18.02■□□□□ 0.48
CLN3-250ENST00000636839 PDGFAP04085 211 aa18.02■□□□□ 0.48
CLN3-250ENST00000636839 LCKP06239 509 aa18.02■□□□□ 0.48
CLN3-250ENST00000636839 GGNQ86UU5 652 aa18.02■□□□□ 0.48
CLN3-250ENST00000636839 FAR1Q8WVX9 515 aa18.02■□□□□ 0.48
CLN3-250ENST00000636839 CCDC86Q9H6F5 360 aaKnown RBP18.02■□□□□ 0.48
CLN3-250ENST00000636839 ASB6Q9NWX5 421 aa18.02■□□□□ 0.48
CLN3-250ENST00000636839 CNOT2Q9NZN8 540 aaKnown RBP18.02■□□□□ 0.48
CLN3-250ENST00000636839 H2AFY2Q9P0M6 372 aaPredicted RBP18.02■□□□□ 0.48
CLN3-250ENST00000636839 TNFRSF10DQ9UBN6 386 aa18.02■□□□□ 0.48
CLN3-250ENST00000636839 HDGFL3Q9Y3E1 203 aa18.02■□□□□ 0.48
CLN3-250ENST00000636839 DCTN6O00399 190 aa18.01■□□□□ 0.47
CLN3-250ENST00000636839 WISP2O76076 250 aa18.01■□□□□ 0.47
CLN3-250ENST00000636839 SLC2A5P22732 501 aa18.01■□□□□ 0.47
CLN3-250ENST00000636839 HTR1FP30939 366 aa18.01■□□□□ 0.47
CLN3-250ENST00000636839 PPIAP62937 165 aaKnown RBP18.01■□□□□ 0.47
CLN3-250ENST00000636839 KRR1Q13601 381 aaKnown RBP18.01■□□□□ 0.47
CLN3-250ENST00000636839 LYPD4Q6UWN0 246 aa18.01■□□□□ 0.47
CLN3-250ENST00000636839 MEPCEQ7L2J0 689 aaKnown RBP18.01■□□□□ 0.47
CLN3-250ENST00000636839 SCAIQ8N9R8 606 aa18.01■□□□□ 0.47
CLN3-250ENST00000636839 ZFP62Q8NB50 900 aaPredicted RBP18.01■□□□□ 0.47
CLN3-250ENST00000636839 UCN2Q96RP3 112 aa18.01■□□□□ 0.47
CLN3-250ENST00000636839 TEAD3Q99594 435 aa18.01■□□□□ 0.47
CLN3-250ENST00000636839 SMAD5Q99717 465 aaKnown RBP18.01■□□□□ 0.47
CLN3-250ENST00000636839 SRXN1Q9BYN0 137 aa18.01■□□□□ 0.47
CLN3-250ENST00000636839 CCNB1IP1Q9NPC3 277 aa18.01■□□□□ 0.47
CLN3-250ENST00000636839 ACOT13Q9NPJ3 140 aa18.01■□□□□ 0.47
CLN3-250ENST00000636839 MED29Q9NX70 200 aa18.01■□□□□ 0.47
CLN3-250ENST00000636839 MRPS18CQ9Y3D5 142 aaKnown RBP18.01■□□□□ 0.47
CLN3-250ENST00000636839 ANKRD11Q6UB99 2663 aaPredicted RBP18.01■□□□□ 0.47
CLN3-250ENST00000636839 ARHGEF9O43307 516 aa18.01■□□□□ 0.47
CLN3-250ENST00000636839 IDH3BO43837 385 aa18.01■□□□□ 0.47
CLN3-250ENST00000636839 TXNDC12O95881 172 aa18.01■□□□□ 0.47
CLN3-250ENST00000636839 HPNP05981 417 aa18.01■□□□□ 0.47
CLN3-250ENST00000636839 IFNGR1P15260 489 aa18.01■□□□□ 0.47
CLN3-250ENST00000636839 RPS7P62081 194 aaKnown RBP18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms