RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 VPS25Q9BRG1 176 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 PPP5D1E7EU14 171 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 PSMB6P28072 239 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 SNCAP37840 140 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 CTSOP43234 321 aaPredicted RBP8.27□□□□□ -1.09
VCL-206ENST00000623461 SLC11A1P49279 550 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 MRPL19P49406 292 aaKnown RBP8.27□□□□□ -1.09
VCL-206ENST00000623461 HOXA1P49639 335 aaPredicted RBP8.27□□□□□ -1.09
VCL-206ENST00000623461 SIM1P81133 766 aaPredicted RBP8.27□□□□□ -1.09
VCL-206ENST00000623461 FABP5Q01469 135 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 RNF151Q2KHN1 245 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 TMEM88Q6PEY1 159 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 ZNF620Q6ZNG0 422 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 BCDIN3DQ7Z5W3 292 aaKnown RBP8.27□□□□□ -1.09
VCL-206ENST00000623461 CSNK1A1LQ8N752 337 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 OR13C2Q8NGS9 318 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 OR14L1PQ8NHC6 308 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 LRFN5Q96NI6 719 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 ZCCHC4Q9H5U6 513 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 WDR76Q9H967 626 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 NHSL1Q5SYE7 1610 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 ICE1Q9Y2F5 2266 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 C17orf112F2Z3M2 114 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 C5AR1P21730 350 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 MMP11P24347 488 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 COX20Q5RI15 118 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 TTLL10Q6ZVT0 673 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 ZNF280BQ86YH2 543 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 ACOT4Q8N9L9 421 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 TMEM18Q96B42 140 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 C11orf84Q9BUA3 381 aaPredicted RBP8.27□□□□□ -1.09
VCL-206ENST00000623461 CWH43Q9H720 699 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 MDFIC2A0A1B0GVS7 189 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 OR5K4A6NMS3 321 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 M0R082 166 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 DCTN6O00399 190 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 KLK3P07288 261 aaPredicted RBP8.27□□□□□ -1.09
VCL-206ENST00000623461 CD80P33681 288 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 HBG1P69891 147 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 HBG2P69892 147 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 HYAL2Q12891 473 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 MOGAT2Q3SYC2 334 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 BAGE3Q86Y29 109 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 BAGE2Q86Y30 109 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 OR9K2Q8NGE7 335 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 MITD1Q8WV92 249 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 ISG20Q96AZ6 181 aaKnown RBP8.27□□□□□ -1.09
VCL-206ENST00000623461 MARVELD1Q9BSK0 173 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 ZNF286AQ9HBT8 521 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP8.27□□□□□ -1.094e-6■■■□□ 15.2
VCL-206ENST00000623461 GALP22466 123 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 TMEM179BQ7Z7N9 219 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 UEVLDQ8IX04 471 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 FAM185AQ8N0U4 392 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 STPG2Q8N412 459 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 MMABQ96EY8 250 aaPredicted RBP8.27□□□□□ -1.09
VCL-206ENST00000623461 CSF3RQ99062 836 aa8.27□□□□□ -1.09
VCL-206ENST00000623461 SIDT1Q9NXL6 827 aaKnown RBP8.27□□□□□ -1.09
VCL-206ENST00000623461 TAPBPO15533 448 aa8.26□□□□□ -1.09
VCL-206ENST00000623461 C1orf105O95561 183 aa8.26□□□□□ -1.09
VCL-206ENST00000623461 DUSP3P51452 185 aaPredicted RBP8.26□□□□□ -1.09
VCL-206ENST00000623461 RPS21P63220 83 aaKnown RBP8.26□□□□□ -1.09
VCL-206ENST00000623461 IAH1Q2TAA2 248 aaPredicted RBP8.26□□□□□ -1.09
VCL-206ENST00000623461 WBP2NLQ6ICG8 309 aa8.26□□□□□ -1.09
VCL-206ENST00000623461 SMIM15Q7Z3B0 74 aa8.26□□□□□ -1.09
VCL-206ENST00000623461 DUSP18Q8NEJ0 188 aa8.26□□□□□ -1.09
VCL-206ENST00000623461 KCNG3Q8TAE7 436 aa8.26□□□□□ -1.09
VCL-206ENST00000623461 SENP5Q96HI0 755 aaPredicted RBP8.26□□□□□ -1.09
VCL-206ENST00000623461 CPEB1Q9BZB8 566 aaKnown RBP8.26□□□□□ -1.09
VCL-206ENST00000623461 CHRNA9Q9UGM1 479 aa8.26□□□□□ -1.09
VCL-206ENST00000623461 NPIPB15A6NHN6 443 aaPredicted RBP8.26□□□□□ -1.09
VCL-206ENST00000623461 FXYD1O00168 92 aa8.26□□□□□ -1.09
VCL-206ENST00000623461 RRASP10301 218 aa8.26□□□□□ -1.09
VCL-206ENST00000623461 MTHFD2P13995 350 aa8.26□□□□□ -1.09
VCL-206ENST00000623461 SERPINA2P20848 420 aa8.26□□□□□ -1.09
VCL-206ENST00000623461 FGF7P21781 194 aa8.26□□□□□ -1.09
VCL-206ENST00000623461 THBS3P49746 956 aa8.26□□□□□ -1.09
VCL-206ENST00000623461 FLT3LGP49771 235 aa8.26□□□□□ -1.09
VCL-206ENST00000623461 GATMP50440 423 aa8.26□□□□□ -1.09
VCL-206ENST00000623461 SLC7A9P82251 487 aa8.26□□□□□ -1.09
VCL-206ENST00000623461 DPY19L2P2Q6ZN68 376 aa8.26□□□□□ -1.09
VCL-206ENST00000623461 OR4N5Q8IXE1 308 aa8.26□□□□□ -1.09
VCL-206ENST00000623461 TMEM106AQ96A25 262 aa8.26□□□□□ -1.09
VCL-206ENST00000623461 ALG12Q9BV10 488 aa8.26□□□□□ -1.09
VCL-206ENST00000623461 GAB2Q9UQC2 676 aa8.26□□□□□ -1.09
VCL-206ENST00000623461 M0QYG6 137 aa8.26□□□□□ -1.09
VCL-206ENST00000623461 GATCO43716 136 aaKnown RBP8.26□□□□□ -1.09
VCL-206ENST00000623461 EDIL3O43854 480 aa8.26□□□□□ -1.09
VCL-206ENST00000623461 RAD1O60671 282 aa8.26□□□□□ -1.09
VCL-206ENST00000623461 OR8G3PP0DMU2 310 aa8.26□□□□□ -1.09
VCL-206ENST00000623461 PCMT1P22061 227 aa8.26□□□□□ -1.09
VCL-206ENST00000623461 MRPL49Q13405 166 aaKnown RBP8.26□□□□□ -1.09
VCL-206ENST00000623461 Q3ZCU0 254 aa8.26□□□□□ -1.09
VCL-206ENST00000623461 COX15Q7KZN9 410 aa8.26□□□□□ -1.09
VCL-206ENST00000623461 APCDD1Q8J025 514 aa8.26□□□□□ -1.09
VCL-206ENST00000623461 RELL2Q8NC24 303 aaPredicted RBP8.26□□□□□ -1.09
VCL-206ENST00000623461 HPSE2Q8WWQ2 592 aa8.26□□□□□ -1.09
VCL-206ENST00000623461 FAM71F1Q96KD3 344 aaPredicted RBP8.26□□□□□ -1.09
VCL-206ENST00000623461 UHRF2Q96PU4 802 aa8.26□□□□□ -1.09
VCL-206ENST00000623461 MMP26Q9NRE1 261 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms