RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 CLUP10909 449 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 HLA-DOBP13765 273 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 JUNBP17275 347 aaPredicted RBP12.8□□□□□ -0.36
USP39-220ENST00000613444 HTR1FP30939 366 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 CDKN2AP42771 156 aaKnown RBP12.8□□□□□ -0.36
USP39-220ENST00000613444 DIO1P49895 249 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 CDH11P55287 796 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 PUDPQ08623 228 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 IRF3Q14653 427 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 MESTQ5EB52 335 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 EMC4Q5J8M3 183 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 SATL1Q86VE3 508 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 KDM8Q8N371 416 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 LSM14AQ8ND56 463 aaKnown RBP12.8□□□□□ -0.36
USP39-220ENST00000613444 ADPRHL1Q8NDY3 354 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 MYDGFQ969H8 173 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 TMIGD2Q96BF3 282 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 NMNAT3Q96T66 252 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 NMNAT2Q9BZQ4 307 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 CCDC90BQ9GZT6 254 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 INIPQ9NRY2 104 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 B3GAT1Q9P2W7 334 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 ZNF346Q9UL40 294 aaKnown RBP12.8□□□□□ -0.36
USP39-220ENST00000613444 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.8□□□□□ -0.36
USP39-220ENST00000613444 BSNQ9UPA5 3926 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 IGF2RP11717 2491 aa12.8□□□□□ -0.36
USP39-220ENST00000613444 PTPRQQ9UMZ3 2332 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 ATMQ13315 3056 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 A0A0J9YW62 118 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 CCDC182A6NF36 153 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 PRR23D1E9PI22 279 aaPredicted RBP12.79□□□□□ -0.36
USP39-220ENST00000613444 RNF13O43567 381 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 PMS2P2O95744 297 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 IFNGP01579 166 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 PRR23D2P0DMB1 279 aaPredicted RBP12.79□□□□□ -0.36
USP39-220ENST00000613444 KLK2P20151 261 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 AHCYP23526 432 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 MAGEA5P43359 124 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 H3F3AP84243 136 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 TLE3Q04726 772 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 GPR139Q6DWJ6 353 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 GTF2IRD2BQ6EKJ0 949 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 CCDC81Q6ZN84 652 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.79□□□□□ -0.36
USP39-220ENST00000613444 GTF2IRD2Q86UP8 949 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 GGNQ86UU5 652 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 TMEM99Q8N816 258 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 ZNF519Q8TB69 540 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 RFKQ969G6 155 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 LGALS12Q96DT0 336 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 CCDC86Q9H6F5 360 aaKnown RBP12.79□□□□□ -0.36
USP39-220ENST00000613444 B4GALT7Q9UBV7 327 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 A0A1W2PNV4 684 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 FAM166BA8MTA8 275 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 H0YC42 278 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 MAP2K4P45985 399 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 MTNR1AP48039 350 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 CLDN15P56746 228 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 OR2B6P58173 313 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 NEDD8Q15843 81 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 ACKR1Q16570 336 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 FOXB2Q5VYV0 432 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 B3GNT6Q6ZMB0 384 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 MEPCEQ7L2J0 689 aaKnown RBP12.79□□□□□ -0.36
USP39-220ENST00000613444 GID4Q8IVV7 300 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 EXD3Q8N9H8 876 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 TMEM178AQ8NBL3 297 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 FAM98AQ8NCA5 519 aaKnown RBP12.79□□□□□ -0.36
USP39-220ENST00000613444 OR52I1Q8NGK6 324 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 FAR1Q8WVX9 515 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 RNFT2Q96EX2 444 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 SFXN2Q96NB2 322 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 CDCA4Q9BXL8 241 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 NDEL1Q9GZM8 345 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 TXNIPQ9H3M7 391 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 GRHPRQ9UBQ7 328 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 SNX5Q9Y5X3 404 aa12.79□□□□□ -0.36
USP39-220ENST00000613444 PRRC2CQ9Y520 2896 aaKnown RBP12.78□□□□□ -0.36
USP39-220ENST00000613444 CACNA1AO00555 2505 aa12.78□□□□□ -0.36
USP39-220ENST00000613444 SNTNA6NMZ2 147 aa12.78□□□□□ -0.36
USP39-220ENST00000613444 SULT2B1O00204 365 aa12.78□□□□□ -0.36
USP39-220ENST00000613444 OR6A2O95222 327 aa12.78□□□□□ -0.36
USP39-220ENST00000613444 PLGP00747 810 aaPredicted RBP12.78□□□□□ -0.36
USP39-220ENST00000613444 ADRB1P08588 477 aa12.78□□□□□ -0.36
USP39-220ENST00000613444 ACVR2AP27037 513 aa12.78□□□□□ -0.36
USP39-220ENST00000613444 GTF2E2P29084 291 aaKnown RBP12.78□□□□□ -0.36
USP39-220ENST00000613444 CLDN20P56880 219 aa12.78□□□□□ -0.36
USP39-220ENST00000613444 RPL27P61353 136 aaKnown RBP12.78□□□□□ -0.36
USP39-220ENST00000613444 KRR1Q13601 381 aaKnown RBP12.78□□□□□ -0.36
USP39-220ENST00000613444 RNFT1Q5M7Z0 435 aa12.78□□□□□ -0.36
USP39-220ENST00000613444 ARMC4Q5T2S8 1044 aa12.78□□□□□ -0.36
USP39-220ENST00000613444 B3GLCTQ6Y288 498 aa12.78□□□□□ -0.36
USP39-220ENST00000613444 WDFY1Q8IWB7 410 aa12.78□□□□□ -0.36
USP39-220ENST00000613444 STX19Q8N4C7 294 aa12.78□□□□□ -0.36
USP39-220ENST00000613444 ARIH2OSQ8N7S6 290 aa12.78□□□□□ -0.36
USP39-220ENST00000613444 ZNRF4Q8WWF5 429 aa12.78□□□□□ -0.36
USP39-220ENST00000613444 OTULINQ96BN8 352 aa12.78□□□□□ -0.36
USP39-220ENST00000613444 ADGRG7Q96K78 797 aa12.78□□□□□ -0.36
USP39-220ENST00000613444 KLHL15Q96M94 604 aa12.78□□□□□ -0.36
USP39-220ENST00000613444 ACOT13Q9NPJ3 140 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms