RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 GTF2IRD2BQ6EKJ0 949 aa11.17□□□□□ -0.62
SHMT2-230ENST00000557427 FIGNL1Q6PIW4 674 aa11.17□□□□□ -0.62
SHMT2-230ENST00000557427 KLHL17Q6TDP4 642 aa11.17□□□□□ -0.62
SHMT2-230ENST00000557427 FRRS1Q6ZNA5 592 aa11.17□□□□□ -0.62
SHMT2-230ENST00000557427 OLIG3Q7RTU3 272 aa11.17□□□□□ -0.62
SHMT2-230ENST00000557427 GTF2IRD2Q86UP8 949 aa11.17□□□□□ -0.62
SHMT2-230ENST00000557427 COMTD1Q86VU5 262 aa11.17□□□□□ -0.62
SHMT2-230ENST00000557427 RBM45Q8IUH3 476 aaKnown RBP11.17□□□□□ -0.62
SHMT2-230ENST00000557427 ERI1Q8IV48 349 aaKnown RBP11.17□□□□□ -0.62
SHMT2-230ENST00000557427 PM20D2Q8IYS1 436 aa11.17□□□□□ -0.62
SHMT2-230ENST00000557427 CDRT4Q8N9R6 151 aa11.17□□□□□ -0.62
SHMT2-230ENST00000557427 SLC16A11Q8NCK7 471 aa11.17□□□□□ -0.62
SHMT2-230ENST00000557427 APH1BQ8WW43 257 aa11.17□□□□□ -0.62
SHMT2-230ENST00000557427 PMM1Q92871 262 aa11.17□□□□□ -0.62
SHMT2-230ENST00000557427 CDS1Q92903 461 aa11.17□□□□□ -0.62
SHMT2-230ENST00000557427 MUL1Q969V5 352 aa11.17□□□□□ -0.62
SHMT2-230ENST00000557427 ISOC1Q96CN7 298 aa11.17□□□□□ -0.62
SHMT2-230ENST00000557427 FNDC11Q9BVV2 318 aa11.17□□□□□ -0.62
SHMT2-230ENST00000557427 PLA2G12AQ9BZM1 189 aa11.17□□□□□ -0.62
SHMT2-230ENST00000557427 RTN4RQ9BZR6 473 aa11.17□□□□□ -0.62
SHMT2-230ENST00000557427 ANKRD19PQ9H560 264 aa11.17□□□□□ -0.62
SHMT2-230ENST00000557427 MTHFD2LQ9H903 347 aaPredicted RBP11.17□□□□□ -0.62
SHMT2-230ENST00000557427 SDHAF3Q9NRP4 125 aa11.17□□□□□ -0.62
SHMT2-230ENST00000557427 DUSP22Q9NRW4 184 aa11.17□□□□□ -0.62
SHMT2-230ENST00000557427 PAK1IP1Q9NWT1 392 aaPredicted RBP11.17□□□□□ -0.62
SHMT2-230ENST00000557427 NDRG3Q9UGV2 375 aa11.17□□□□□ -0.62
SHMT2-230ENST00000557427 SLC13A4Q9UKG4 626 aa11.17□□□□□ -0.62
SHMT2-230ENST00000557427 TTC36A6NLP5 189 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 ZAR1LA6NP61 321 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 A8MV72 311 aaPredicted RBP11.16□□□□□ -0.62
SHMT2-230ENST00000557427 A8MXE2 369 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 B4DXG7 233 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 SPRY1O43609 319 aaPredicted RBP11.16□□□□□ -0.62
SHMT2-230ENST00000557427 XPNPEP2O43895 674 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 MPZL2O60487 215 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 FAM20BO75063 409 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 NKX2-2O95096 273 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 ACTL6AO96019 429 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 TP53P04637 393 aaPredicted RBP11.16□□□□□ -0.62
SHMT2-230ENST00000557427 THBS1P07996 1170 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 GUSBP08236 651 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 TMIGD3P0DMS9 266 aaPredicted RBP11.16□□□□□ -0.62
SHMT2-230ENST00000557427 OSMP13725 252 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 HK1P19367 917 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 PCMT1P22061 227 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 FUT4P22083 530 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 CRYGSP22914 178 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 SRD5A2P31213 254 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 MAP3K8P41279 467 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 UGT2B15P54855 530 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 ATP5J2P56134 94 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 MVKQ03426 396 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 FAM27E3Q08E93 113 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 SF3B4Q15427 424 aaKnown RBP eCLIP11.16□□□□□ -0.628e-12■■■■■ 35.4
SHMT2-230ENST00000557427 SEC23BQ15437 767 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 NPTX1Q15818 432 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 DUSP5Q16690 384 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 CLEC12BQ2HXU8 276 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 TYW3Q6IPR3 259 aaKnown RBP11.16□□□□□ -0.62
SHMT2-230ENST00000557427 PLXDC2Q6UX71 529 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 APOOLQ6UXV4 268 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 CD300LDQ6UXZ3 194 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 C22orf34Q6ZV56 151 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 PLEKHM3Q6ZWE6 761 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 SVOPQ8N4V2 548 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 OR6T1Q8NGN1 323 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 OR5M1Q8NGP8 315 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 OR52P1PQ8NH57 321 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 RHOXF1Q8NHV9 184 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 FAM81AQ8TBF8 368 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 SGCDQ92629 289 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 HOXB13Q92826 284 aaPredicted RBP11.16□□□□□ -0.62
SHMT2-230ENST00000557427 GTPBP3Q969Y2 492 aaKnown RBP11.16□□□□□ -0.62
SHMT2-230ENST00000557427 SFXN2Q96NB2 322 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 SIGLEC11Q96RL6 698 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 SDF2Q99470 211 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 WFDC6Q9BQY6 131 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 TBL1XR1Q9BZK7 514 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 OR2B2Q9GZK3 357 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 SAP130Q9H0E3 1048 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 CACYBPQ9HB71 228 aaKnown RBP11.16□□□□□ -0.62
SHMT2-230ENST00000557427 FBXO34Q9NWN3 711 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 REV1Q9UBZ9 1251 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 ZNF232Q9UNY5 417 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 WDR45Q9Y484 360 aa11.16□□□□□ -0.62
SHMT2-230ENST00000557427 PTGES3LE9PB15 166 aa11.15□□□□□ -0.62
SHMT2-230ENST00000557427 RGS10O43665 173 aa11.15□□□□□ -0.62
SHMT2-230ENST00000557427 OR10H3O60404 316 aa11.15□□□□□ -0.62
SHMT2-230ENST00000557427 TRMUO75648 421 aaKnown RBP11.15□□□□□ -0.62
SHMT2-230ENST00000557427 KCNK2O95069 426 aa11.15□□□□□ -0.62
SHMT2-230ENST00000557427 GABRB1P18505 474 aa11.15□□□□□ -0.62
SHMT2-230ENST00000557427 RPS4Y1P22090 263 aaKnown RBP11.15□□□□□ -0.62
SHMT2-230ENST00000557427 IFNA8P32881 189 aa11.15□□□□□ -0.62
SHMT2-230ENST00000557427 TMBIM6P55061 237 aa11.15□□□□□ -0.62
SHMT2-230ENST00000557427 DSCR4P56555 118 aaPredicted RBP11.15□□□□□ -0.62
SHMT2-230ENST00000557427 CDC42P60953 191 aa11.15□□□□□ -0.62
SHMT2-230ENST00000557427 ROR2Q01974 943 aaKnown RBP11.15□□□□□ -0.62
SHMT2-230ENST00000557427 COX10Q12887 443 aa11.15□□□□□ -0.62
SHMT2-230ENST00000557427 PIN1Q13526 163 aaPredicted RBP11.15□□□□□ -0.62
SHMT2-230ENST00000557427 LARS2Q15031 903 aaKnown RBP11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms