RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 THAP2Q9H0W7 228 aa3.22□□□□□ -1.89
LIMA1-208ENST00000551691 PLEKHF2Q9H8W4 249 aa3.22□□□□□ -1.89
LIMA1-208ENST00000551691 LRTM1Q9HBL6 345 aa3.22□□□□□ -1.89
LIMA1-208ENST00000551691 SLC25A19Q9HC21 320 aa3.22□□□□□ -1.89
LIMA1-208ENST00000551691 KCNJ16Q9NPI9 418 aa3.22□□□□□ -1.89
LIMA1-208ENST00000551691 AGPAT3Q9NRZ7 376 aa3.22□□□□□ -1.89
LIMA1-208ENST00000551691 IKZF3Q9UKT9 509 aa3.22□□□□□ -1.89
LIMA1-208ENST00000551691 FZR1Q9UM11 496 aa3.22□□□□□ -1.89
LIMA1-208ENST00000551691 NAALAD2Q9Y3Q0 740 aa3.22□□□□□ -1.89
LIMA1-208ENST00000551691 LRP12Q9Y561 859 aa3.22□□□□□ -1.89
LIMA1-208ENST00000551691 HYDINQ4G0P3 5121 aa3.22□□□□□ -1.89
LIMA1-208ENST00000551691 WNK1Q9H4A3 2382 aa3.22□□□□□ -1.89
LIMA1-208ENST00000551691 TNFSF12-TNFSF13A0A0A6YY99 330 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 SH3PXD2BA1X283 911 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 WASHC1A8K0Z3 465 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 NPIPA5E9PKD4 350 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 H0YC42 278 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 EI24O14681 340 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 P2RX6O15547 441 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 FGF17O60258 216 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 BCAS1O75363 584 aaPredicted RBP3.21□□□□□ -1.9
LIMA1-208ENST00000551691 CLDN11O75508 207 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 SCGNO76038 276 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 NDUFA7O95182 113 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 NGFP01138 241 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 TSHBP01222 138 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 APOEP02649 317 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 FCER2P06734 321 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 UMODP07911 640 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 HOXC4P09017 264 aaPredicted RBP3.21□□□□□ -1.9
LIMA1-208ENST00000551691 OR1E1P30953 314 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 GPR183P32249 361 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 RORAP35398 523 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 HTR5AP47898 357 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 GCLMP48507 274 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 CEBPDP49716 269 aaPredicted RBP3.21□□□□□ -1.9
LIMA1-208ENST00000551691 RGS4P49798 205 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 CDH4P55283 916 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 LINC00205P59089 165 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 ARG2P78540 354 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 TNFRSF17Q02223 184 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 ORC2Q13416 577 aaPredicted RBP3.21□□□□□ -1.9
LIMA1-208ENST00000551691 EIF4EBP2Q13542 120 aaPredicted RBP3.21□□□□□ -1.9
LIMA1-208ENST00000551691 NCF4Q15080 339 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 RCN1Q15293 331 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 HKDC1Q2TB90 917 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 ANKRD55Q3KP44 614 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 PYCR3Q53H96 274 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 SPANXN4Q5MJ08 99 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 TTC23Q5W5X9 447 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 TMEM225Q6GV28 225 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 CBLN3Q6UW01 205 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 Q6ZPB1 254 aaPredicted RBP3.21□□□□□ -1.9
LIMA1-208ENST00000551691 DPY19L4Q7Z388 723 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 RAB43Q86YS6 212 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 ZNF683Q8IZ20 524 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 UBE2J2Q8N2K1 259 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 ATP6V0D2Q8N8Y2 350 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 ADAD2Q8NCV1 583 aaKnown RBP3.21□□□□□ -1.9
LIMA1-208ENST00000551691 TRIM58Q8NG06 486 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 AKR7LQ8NHP1 331 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 ZNRF4Q8WWF5 429 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 HPSE2Q8WWQ2 592 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 ZNF501Q96CX3 271 aaPredicted RBP3.21□□□□□ -1.9
LIMA1-208ENST00000551691 C8orf76Q96K31 380 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 ZNF514Q96K75 400 aaPredicted RBP3.21□□□□□ -1.9
LIMA1-208ENST00000551691 SERPINB11Q96P15 392 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 AGAP3Q96P47 875 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 PAPOLGQ9BWT3 736 aaKnown RBP3.21□□□□□ -1.9
LIMA1-208ENST00000551691 RBM24Q9BX46 236 aaKnown RBP3.21□□□□□ -1.9
LIMA1-208ENST00000551691 RAB11FIP5Q9BXF6 653 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 MRPL13Q9BYD1 178 aaKnown RBP3.21□□□□□ -1.9
LIMA1-208ENST00000551691 PKIBQ9C010 78 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 LPAR2Q9HBW0 351 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 SIX2Q9NPC8 291 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 CISHQ9NSE2 258 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 STMN3Q9NZ72 180 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 NPIPA1Q9UND3 350 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 CAB39Q9Y376 341 aaPredicted RBP3.21□□□□□ -1.9
LIMA1-208ENST00000551691 WDR45Q9Y484 360 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 USF3Q68DE3 2245 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 RYR1P21817 5038 aa3.21□□□□□ -1.9
LIMA1-208ENST00000551691 ABCA1O95477 2261 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 NPIPA2E9PIF3 369 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 PPIAL4DF5H284 164 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 H3BMH7 237 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 SGK494L7N484 410 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 ARHGEF9O43307 516 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 BUB3O43684 328 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 KLHL41O60662 606 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 B4GALT2O60909 372 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 MTRF1O75570 445 aaKnown RBP3.2□□□□□ -1.9
LIMA1-208ENST00000551691 NXPH2O95156 264 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 CLPTM1O96005 669 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 IGLV3-25P01717 112 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 MT-ND1P03886 318 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 HSMCR30P0CW71 290 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 CYP11B1P15538 503 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 ZNF44P15621 663 aa3.2□□□□□ -1.9
LIMA1-208ENST00000551691 GLRA1P23415 457 aa3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms