RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 TM9SF3Q9HD45 589 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 QPCTLQ9NXS2 382 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 SLC2A8Q9NY64 477 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 MTRF1LQ9UGC7 380 aaKnown RBP2.87□□□□□ -1.95
VPS29-205ENST00000548539 IKZF2Q9UKS7 526 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 ZNF256Q9Y2P7 627 aaPredicted RBP2.87□□□□□ -1.95
VPS29-205ENST00000548539 CDH10Q9Y6N8 788 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 LRRK1Q38SD2 2015 aa2.86□□□□□ -1.95
VPS29-205ENST00000548539 CTAGE15A4D2H0 777 aa2.86□□□□□ -1.95
VPS29-205ENST00000548539 ERLIN1O75477 346 aa2.86□□□□□ -1.95
VPS29-205ENST00000548539 UPK3AO75631 287 aa2.86□□□□□ -1.95
VPS29-205ENST00000548539 BBOX1O75936 387 aa2.86□□□□□ -1.95
VPS29-205ENST00000548539 TMEM50AO95807 157 aa2.86□□□□□ -1.95
VPS29-205ENST00000548539 CST1P01037 141 aa2.86□□□□□ -1.95
VPS29-205ENST00000548539 SERPIND1P05546 499 aa2.86□□□□□ -1.95
VPS29-205ENST00000548539 GIPP09681 153 aaPredicted RBP2.86□□□□□ -1.95
VPS29-205ENST00000548539 CHMLP26374 656 aa2.86□□□□□ -1.95
VPS29-205ENST00000548539 PLP1P60201 277 aa2.86□□□□□ -1.95
VPS29-205ENST00000548539 BEX3Q00994 111 aa2.86□□□□□ -1.95
VPS29-205ENST00000548539 BST2Q10589 180 aaKnown RBP2.86□□□□□ -1.95
VPS29-205ENST00000548539 GNMTQ14749 295 aa2.86□□□□□ -1.95
VPS29-205ENST00000548539 IL17AQ16552 155 aa2.86□□□□□ -1.95
VPS29-205ENST00000548539 DGUOKQ16854 277 aa2.86□□□□□ -1.95
VPS29-205ENST00000548539 CCDC14Q49A88 953 aa2.86□□□□□ -1.95
VPS29-205ENST00000548539 OTPQ5XKR4 325 aa2.86□□□□□ -1.95
VPS29-205ENST00000548539 RNF165Q6ZSG1 346 aa2.86□□□□□ -1.95
VPS29-205ENST00000548539 ASCL5Q7RTU5 278 aa2.86□□□□□ -1.95
VPS29-205ENST00000548539 CTAGE6Q86UF2 777 aa2.86□□□□□ -1.95
VPS29-205ENST00000548539 PAQR7Q86WK9 346 aa2.86□□□□□ -1.95
VPS29-205ENST00000548539 PLA2G4DQ86XP0 818 aa2.86□□□□□ -1.95
VPS29-205ENST00000548539 PIANPQ8IYJ0 282 aa2.86□□□□□ -1.95
VPS29-205ENST00000548539 DCAF4L2Q8NA75 395 aa2.86□□□□□ -1.95
VPS29-205ENST00000548539 OR4F6Q8NGB9 312 aa2.86□□□□□ -1.95
VPS29-205ENST00000548539 OR6C4Q8NGE1 309 aa2.86□□□□□ -1.95
VPS29-205ENST00000548539 SMARCD2Q92925 531 aa2.86□□□□□ -1.95
VPS29-205ENST00000548539 UCN3Q969E3 161 aa2.86□□□□□ -1.95
VPS29-205ENST00000548539 PELOQ9BRX2 385 aaKnown RBP2.86□□□□□ -1.95
VPS29-205ENST00000548539 GBA3Q9H227 469 aa2.86□□□□□ -1.95
VPS29-205ENST00000548539 NIPAL2Q9H841 368 aa2.86□□□□□ -1.95
VPS29-205ENST00000548539 SIAEQ9HAT2 523 aa2.86□□□□□ -1.95
VPS29-205ENST00000548539 LY9Q9HBG7 655 aa2.86□□□□□ -1.95
VPS29-205ENST00000548539 ADAP2Q9NPF8 381 aa2.86□□□□□ -1.95
VPS29-205ENST00000548539 SPATA7Q9P0W8 599 aa2.86□□□□□ -1.95
VPS29-205ENST00000548539 PLEKHG1Q9ULL1 1385 aa2.86□□□□□ -1.95
VPS29-205ENST00000548539 HEATR9A2RTY3 570 aa2.85□□□□□ -1.95
VPS29-205ENST00000548539 KLLNB2CW77 178 aa2.85□□□□□ -1.95
VPS29-205ENST00000548539 C12orf77C9JDV5 145 aa2.85□□□□□ -1.95
VPS29-205ENST00000548539 PPP1R2P9O14990 202 aa2.85□□□□□ -1.95
VPS29-205ENST00000548539 NPIPB7O75200 414 aa2.85□□□□□ -1.95
VPS29-205ENST00000548539 CT62P0C5K7 136 aa2.85□□□□□ -1.95
VPS29-205ENST00000548539 KRTAP1-4P0C5Y4 121 aa2.85□□□□□ -1.95
VPS29-205ENST00000548539 MCF2P10911 925 aa2.85□□□□□ -1.95
VPS29-205ENST00000548539 TNNI1P19237 187 aa2.85□□□□□ -1.95
VPS29-205ENST00000548539 TBPP20226 339 aa2.85□□□□□ -1.95
VPS29-205ENST00000548539 KITLGP21583 273 aa2.85□□□□□ -1.95
VPS29-205ENST00000548539 HTR1EP28566 365 aa2.85□□□□□ -1.95
VPS29-205ENST00000548539 ATP5C1P36542 298 aaKnown RBP2.85□□□□□ -1.95
VPS29-205ENST00000548539 DLX1P56177 255 aa2.85□□□□□ -1.95
VPS29-205ENST00000548539 KCNJ2P63252 427 aa2.85□□□□□ -1.95
VPS29-205ENST00000548539 TGFBIQ15582 683 aa2.85□□□□□ -1.95
VPS29-205ENST00000548539 NRF1Q16656 503 aa2.85□□□□□ -1.95
VPS29-205ENST00000548539 HSP90AB3PQ58FF7 597 aa2.85□□□□□ -1.95
VPS29-205ENST00000548539 PRAMEF20Q5VT98 475 aa2.85□□□□□ -1.95
VPS29-205ENST00000548539 TRIM40Q6P9F5 258 aa2.85□□□□□ -1.95
VPS29-205ENST00000548539 THOC6Q86W42 341 aaKnown RBP2.85□□□□□ -1.95
VPS29-205ENST00000548539 TMEM61Q8N0U2 210 aa2.85□□□□□ -1.95
VPS29-205ENST00000548539 RDH5Q92781 318 aa2.85□□□□□ -1.95
VPS29-205ENST00000548539 RASD2Q96D21 266 aa2.85□□□□□ -1.95
VPS29-205ENST00000548539 HSFY1Q96LI6 401 aa2.85□□□□□ -1.95
VPS29-205ENST00000548539 OR8B4Q96RC9 309 aa2.85□□□□□ -1.95
VPS29-205ENST00000548539 RASL11BQ9BPW5 248 aa2.85□□□□□ -1.95
VPS29-205ENST00000548539 NUP58Q9BVL2 599 aa2.85□□□□□ -1.95
VPS29-205ENST00000548539 FAIM2Q9BWQ8 316 aa2.85□□□□□ -1.95
VPS29-205ENST00000548539 TMEM59Q9BXS4 323 aa2.85□□□□□ -1.95
VPS29-205ENST00000548539 ROGDIQ9GZN7 287 aa2.85□□□□□ -1.95
VPS29-205ENST00000548539 PSMC3IPQ9P2W1 217 aaPredicted RBP2.85□□□□□ -1.95
VPS29-205ENST00000548539 CTNNA3Q9UI47 895 aa2.85□□□□□ -1.95
VPS29-205ENST00000548539 CSDC2Q9Y534 153 aaKnown RBP2.85□□□□□ -1.95
VPS29-205ENST00000548539 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP2.85□□□□□ -1.95
VPS29-205ENST00000548539 AGRNO00468 2067 aa2.84□□□□□ -1.95
VPS29-205ENST00000548539 GOSR2O14653 212 aa2.84□□□□□ -1.95
VPS29-205ENST00000548539 RNF13O43567 381 aa2.84□□□□□ -1.95
VPS29-205ENST00000548539 TRAF3IP2O43734 574 aaPredicted RBP2.84□□□□□ -1.95
VPS29-205ENST00000548539 ERLIN2O94905 339 aa2.84□□□□□ -1.95
VPS29-205ENST00000548539 NDUFB10O96000 172 aa2.84□□□□□ -1.95
VPS29-205ENST00000548539 CHTF8P0CG12 524 aa2.84□□□□□ -1.95
VPS29-205ENST00000548539 DNAH10OSP0CZ25 163 aa2.84□□□□□ -1.95
VPS29-205ENST00000548539 ICAM2P13598 275 aa2.84□□□□□ -1.95
VPS29-205ENST00000548539 ELK1P19419 428 aa2.84□□□□□ -1.95
VPS29-205ENST00000548539 CRYBB2P43320 205 aa2.84□□□□□ -1.95
VPS29-205ENST00000548539 REG3AQ06141 175 aa2.84□□□□□ -1.95
VPS29-205ENST00000548539 PSG7Q13046 419 aa2.84□□□□□ -1.95
VPS29-205ENST00000548539 UNC119Q13432 240 aa2.84□□□□□ -1.95
VPS29-205ENST00000548539 CUL2Q13617 745 aa2.84□□□□□ -1.95
VPS29-205ENST00000548539 CYTH1Q15438 398 aa2.84□□□□□ -1.95
VPS29-205ENST00000548539 CTRB2Q6GPI1 263 aa2.84□□□□□ -1.95
VPS29-205ENST00000548539 CNIH2Q6PI25 160 aa2.84□□□□□ -1.95
VPS29-205ENST00000548539 TMEM107Q6UX40 140 aa2.84□□□□□ -1.95
VPS29-205ENST00000548539 PUSL1Q8N0Z8 303 aaKnown RBP2.84□□□□□ -1.95
VPS29-205ENST00000548539 OR2G2Q8NGZ5 317 aa2.84□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms