RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 ZNF565Q8N9K5 539 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 ATG16L2Q8NAA4 619 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 OR52J3Q8NH60 311 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 BRIX1Q8TDN6 353 aaKnown RBP7.63□□□□□ -1.19
VPS29-203ENST00000546588 GNPDA2Q8TDQ7 276 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 GPR119Q8TDV5 335 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 FAM216AQ8WUB2 273 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 TMEM239Q8WW34 195 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 THAP4Q8WY91 577 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 NXPE2Q96DL1 559 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 TMEM41AQ96HV5 264 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 SGCZQ96LD1 299 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 CMTM3Q96MX0 182 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 SIGLEC11Q96RL6 698 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 NODALQ96S42 347 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 GPX7Q96SL4 187 aaPredicted RBP7.63□□□□□ -1.19
VPS29-203ENST00000546588 GPA33Q99795 319 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 CHCHD6Q9BRQ6 235 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 ANGPTL4Q9BY76 406 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 KRTAP4-5Q9BYR2 181 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 TBL1XR1Q9BZK7 514 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 UCK2Q9BZX2 261 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 RNF32Q9H0A6 362 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 ZNF160Q9HCG1 818 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 KRCC1Q9NPI7 259 aaPredicted RBP7.63□□□□□ -1.19
VPS29-203ENST00000546588 MEPEQ9NQ76 525 aaPredicted RBP7.63□□□□□ -1.19
VPS29-203ENST00000546588 C19orf73Q9NVV2 129 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 DKK4Q9UBT3 224 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 FBXL4Q9UKA2 621 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 WIF1Q9Y5W5 379 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 FAM186AA6NE01 2351 aa7.63□□□□□ -1.19
VPS29-203ENST00000546588 MED13Q9UHV7 2174 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 IGKV1D-42A0A075B6H8 117 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 WWP2O00308 870 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 BCKDKO14874 412 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 OR10H3O60404 316 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 MRPS14O60783 128 aaKnown RBP7.62□□□□□ -1.19
VPS29-203ENST00000546588 MITFO75030 526 aaPredicted RBP7.62□□□□□ -1.19
VPS29-203ENST00000546588 PLGP00747 810 aaPredicted RBP7.62□□□□□ -1.19
VPS29-203ENST00000546588 LYNP07948 512 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 CELA2AP08217 269 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 LINGO3P0C6S8 592 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 UBTFL6P0CB48 400 aaPredicted RBP7.62□□□□□ -1.19
VPS29-203ENST00000546588 PRKAR1AP10644 381 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 PGCP20142 388 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 CHMP24386 653 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 EPHA2P29317 976 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 SOX3P41225 446 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 CASP3P42574 277 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 SSR4P51571 173 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 CRISP1P54107 249 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 FBXW4P57775 412 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 FXYD6P3P58550 94 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 GABARAPL2P60520 117 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 EGR4Q05215 589 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 RAPSNQ13702 412 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 VASNQ6EMK4 673 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 TMEM154Q6P9G4 183 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 TEPPQ6URK8 271 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 RPTNQ6XPR3 784 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 RPS19BP1Q86WX3 136 aaKnown RBP7.62□□□□□ -1.19
VPS29-203ENST00000546588 PRR22Q8IZ63 422 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 SCAIQ8N9R8 606 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 ZNF555Q8NEP9 628 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 PIGXQ8TBF5 258 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 ENKURQ8TC29 256 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 TMEM255BQ8WV15 326 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 TRUB1Q8WWH5 349 aaKnown RBP7.62□□□□□ -1.19
VPS29-203ENST00000546588 ZNF524Q96C55 264 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 FER1L6-AS2Q96M78 137 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 ZNF556Q9HAH1 456 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 PROK2Q9HC23 129 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 GLRX2Q9NS18 164 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 PLCXD1Q9NUJ7 323 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 CNIH4Q9P003 139 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 POLHQ9Y253 713 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 MRPS18CQ9Y3D5 142 aaKnown RBP7.62□□□□□ -1.19
VPS29-203ENST00000546588 PCDHGB5Q9Y5G0 923 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 GVINP1Q7Z2Y8 2422 aa7.62□□□□□ -1.19
VPS29-203ENST00000546588 TNFSF12-TNFSF13A0A0A6YY99 330 aa7.61□□□□□ -1.19
VPS29-203ENST00000546588 CDC42EP2O14613 210 aa7.61□□□□□ -1.19
VPS29-203ENST00000546588 TP53I11O14683 189 aa7.61□□□□□ -1.19
VPS29-203ENST00000546588 ZNF208O43345 1280 aa7.61□□□□□ -1.19
VPS29-203ENST00000546588 MPZL2O60487 215 aa7.61□□□□□ -1.19
VPS29-203ENST00000546588 PTP4A3O75365 173 aa7.61□□□□□ -1.19
VPS29-203ENST00000546588 HRGP04196 525 aa7.61□□□□□ -1.19
VPS29-203ENST00000546588 LIFP15018 202 aa7.61□□□□□ -1.19
VPS29-203ENST00000546588 CTRB1P17538 263 aa7.61□□□□□ -1.19
VPS29-203ENST00000546588 FKBP2P26885 142 aaKnown RBP7.61□□□□□ -1.19
VPS29-203ENST00000546588 ELK4P28324 431 aa7.61□□□□□ -1.19
VPS29-203ENST00000546588 POLR2IP36954 125 aaKnown RBP7.61□□□□□ -1.19
VPS29-203ENST00000546588 RFX3P48380 749 aa7.61□□□□□ -1.19
VPS29-203ENST00000546588 SNRPGP62308 76 aaKnown RBP7.61□□□□□ -1.19
VPS29-203ENST00000546588 HOXC5Q00444 222 aa7.61□□□□□ -1.19
VPS29-203ENST00000546588 CD47Q08722 323 aa7.61□□□□□ -1.19
VPS29-203ENST00000546588 ATP1A4Q13733 1029 aa7.61□□□□□ -1.19
VPS29-203ENST00000546588 BLMHQ13867 455 aa7.61□□□□□ -1.19
VPS29-203ENST00000546588 MAD2L1BPQ15013 274 aaPredicted RBP7.61□□□□□ -1.19
VPS29-203ENST00000546588 PTGES3Q15185 160 aaKnown RBP7.61□□□□□ -1.19
VPS29-203ENST00000546588 MOGQ16653 247 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms