RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 NSD1Q96L73 2696 aaPredicted RBP10.13□□□□□ -0.79
RTN3-209ENST00000538995 USF3Q68DE3 2245 aa10.13□□□□□ -0.79
RTN3-209ENST00000538995 NAV3Q8IVL0 2385 aa10.12□□□□□ -0.79
RTN3-209ENST00000538995 PLCE1Q9P212 2302 aa10.12□□□□□ -0.79
RTN3-209ENST00000538995 ARPC4-TTLL3A0A0A6YYG9 625 aa10.12□□□□□ -0.79
RTN3-209ENST00000538995 A0A1W2PR80 420 aa10.12□□□□□ -0.79
RTN3-209ENST00000538995 TRAPPC13A5PLN9 417 aa10.12□□□□□ -0.79
RTN3-209ENST00000538995 M0R1B8 84 aa10.12□□□□□ -0.79
RTN3-209ENST00000538995 ATP8B1O43520 1251 aa10.12□□□□□ -0.79
RTN3-209ENST00000538995 TRAF3IP2O43734 574 aaPredicted RBP10.12□□□□□ -0.79
RTN3-209ENST00000538995 BGLAPP02818 100 aa10.12□□□□□ -0.79
RTN3-209ENST00000538995 NQO1P15559 274 aaKnown RBP10.12□□□□□ -0.79
RTN3-209ENST00000538995 MDH1P40925 334 aaKnown RBP10.12□□□□□ -0.79
RTN3-209ENST00000538995 SLC25A3Q00325 362 aa10.12□□□□□ -0.79
RTN3-209ENST00000538995 PUDPQ08623 228 aa10.12□□□□□ -0.79
RTN3-209ENST00000538995 NPTX1Q15818 432 aa10.12□□□□□ -0.79
RTN3-209ENST00000538995 C3orf36Q3SXR2 165 aa10.12□□□□□ -0.79
RTN3-209ENST00000538995 TBRG1Q3YBR2 411 aa10.12□□□□□ -0.79
RTN3-209ENST00000538995 ENTPD8Q5MY95 495 aa10.12□□□□□ -0.79
RTN3-209ENST00000538995 AGAP6Q5VW22 663 aa10.12□□□□□ -0.79
RTN3-209ENST00000538995 HMBOX1Q6NT76 420 aa10.12□□□□□ -0.79
RTN3-209ENST00000538995 ZNF544Q6NX49 715 aa10.12□□□□□ -0.79
RTN3-209ENST00000538995 ANKRD16Q6P6B7 361 aa10.12□□□□□ -0.79
RTN3-209ENST00000538995 SLC22A25Q6T423 547 aa10.12□□□□□ -0.79
RTN3-209ENST00000538995 LINC00114Q6XXX2 140 aa10.12□□□□□ -0.79
RTN3-209ENST00000538995 ARPINQ7Z6K5 226 aa10.12□□□□□ -0.79
RTN3-209ENST00000538995 UEVLDQ8IX04 471 aa10.12□□□□□ -0.79
RTN3-209ENST00000538995 PIK3C3Q8NEB9 887 aa10.12□□□□□ -0.79
RTN3-209ENST00000538995 RNF217Q8TC41 542 aa10.12□□□□□ -0.79
RTN3-209ENST00000538995 ADAMTS16Q8TE57 1224 aa10.12□□□□□ -0.79
RTN3-209ENST00000538995 C10orf82Q8WW14 230 aa10.12□□□□□ -0.79
RTN3-209ENST00000538995 PROX1Q92786 737 aa10.12□□□□□ -0.79
RTN3-209ENST00000538995 DHRS9Q9BPW9 319 aa10.12□□□□□ -0.79
RTN3-209ENST00000538995 ZNF426Q9BUY5 554 aa10.12□□□□□ -0.79
RTN3-209ENST00000538995 POLR2J2Q9GZM3 115 aaKnown RBP10.12□□□□□ -0.79
RTN3-209ENST00000538995 POLR2J3Q9H1A7 115 aaKnown RBP10.12□□□□□ -0.79
RTN3-209ENST00000538995 FKRPQ9H9S5 495 aa10.12□□□□□ -0.79
RTN3-209ENST00000538995 BARX1Q9HBU1 254 aaPredicted RBP10.12□□□□□ -0.79
RTN3-209ENST00000538995 POU2F3Q9UKI9 436 aa10.12□□□□□ -0.79
RTN3-209ENST00000538995 BAG5Q9UL15 447 aa10.12□□□□□ -0.79
RTN3-209ENST00000538995 AP3M1Q9Y2T2 418 aa10.12□□□□□ -0.79
RTN3-209ENST00000538995 NOX1Q9Y5S8 564 aa10.12□□□□□ -0.79
RTN3-209ENST00000538995 FAM220BPB1ANY3 271 aa10.11□□□□□ -0.79
RTN3-209ENST00000538995 H7C1Q1 480 aa10.11□□□□□ -0.79
RTN3-209ENST00000538995 UPK3AO75631 287 aa10.11□□□□□ -0.79
RTN3-209ENST00000538995 IFNA14P01570 189 aa10.11□□□□□ -0.79
RTN3-209ENST00000538995 CRYBA2P53672 197 aa10.11□□□□□ -0.79
RTN3-209ENST00000538995 UBE2NP61088 152 aaKnown RBP10.11□□□□□ -0.79
RTN3-209ENST00000538995 ROR2Q01974 943 aaKnown RBP10.11□□□□□ -0.79
RTN3-209ENST00000538995 SPOCK1Q08629 439 aa10.11□□□□□ -0.79
RTN3-209ENST00000538995 PMS2P3Q13401 168 aa10.11□□□□□ -0.79
RTN3-209ENST00000538995 HIKESHIQ53FT3 197 aa10.11□□□□□ -0.79
RTN3-209ENST00000538995 LINGO2Q7L985 606 aa10.11□□□□□ -0.79
RTN3-209ENST00000538995 TMEM123Q8N131 208 aa10.11□□□□□ -0.79
RTN3-209ENST00000538995 KDM8Q8N371 416 aa10.11□□□□□ -0.79
RTN3-209ENST00000538995 GPR137CQ8N3F9 429 aa10.11□□□□□ -0.79
RTN3-209ENST00000538995 FAM169BQ8N8A8 192 aa10.11□□□□□ -0.79
RTN3-209ENST00000538995 RP9Q8TA86 221 aaKnown RBP10.11□□□□□ -0.79
RTN3-209ENST00000538995 BCL2L2Q92843 193 aaPredicted RBP10.11□□□□□ -0.79
RTN3-209ENST00000538995 LRR1Q96L50 414 aa10.11□□□□□ -0.79
RTN3-209ENST00000538995 OR2M2Q96R28 347 aa10.11□□□□□ -0.79
RTN3-209ENST00000538995 CRNNQ9UBG3 495 aaPredicted RBP10.11□□□□□ -0.79
RTN3-209ENST00000538995 LOC100653049A0A140TA62 436 aa10.1□□□□□ -0.79
RTN3-209ENST00000538995 CPSF4LA6NMK7 179 aaKnown RBP10.1□□□□□ -0.79
RTN3-209ENST00000538995 E7EQL1 145 aa10.1□□□□□ -0.79
RTN3-209ENST00000538995 MS4A18H0YCH9 400 aa10.1□□□□□ -0.79
RTN3-209ENST00000538995 PLPP3O14495 311 aa10.1□□□□□ -0.79
RTN3-209ENST00000538995 CCDC22O60826 627 aa10.1□□□□□ -0.79
RTN3-209ENST00000538995 KRT34O76011 436 aa10.1□□□□□ -0.79
RTN3-209ENST00000538995 LYPD3O95274 346 aa10.1□□□□□ -0.79
RTN3-209ENST00000538995 HPRP00739 348 aa10.1□□□□□ -0.79
RTN3-209ENST00000538995 IGF2P01344 180 aa10.1□□□□□ -0.79
RTN3-209ENST00000538995 CD8AP01732 235 aa10.1□□□□□ -0.79
RTN3-209ENST00000538995 HEXAP06865 529 aa10.1□□□□□ -0.79
RTN3-209ENST00000538995 CDH2P19022 906 aaPredicted RBP10.1□□□□□ -0.79
RTN3-209ENST00000538995 TTKP33981 857 aa10.1□□□□□ -0.79
RTN3-209ENST00000538995 IL1RL1Q01638 556 aa10.1□□□□□ -0.79
RTN3-209ENST00000538995 POU3F1Q03052 451 aaPredicted RBP10.1□□□□□ -0.79
RTN3-209ENST00000538995 LTBQ06643 244 aa10.1□□□□□ -0.79
RTN3-209ENST00000538995 LGALS3BPQ08380 585 aa10.1□□□□□ -0.79
RTN3-209ENST00000538995 ZNF74Q16587 644 aa10.1□□□□□ -0.79
RTN3-209ENST00000538995 MS4A18Q3C1V0 323 aa10.1□□□□□ -0.79
RTN3-209ENST00000538995 C11orf71Q6IPW1 123 aa10.1□□□□□ -0.79
RTN3-209ENST00000538995 TTC33Q6PID6 262 aaPredicted RBP10.1□□□□□ -0.79
RTN3-209ENST00000538995 PXKQ7Z7A4 578 aa10.1□□□□□ -0.79
RTN3-209ENST00000538995 CCDC36Q8IYA8 594 aa10.1□□□□□ -0.79
RTN3-209ENST00000538995 FBXL14Q8N1E6 418 aa10.1□□□□□ -0.79
RTN3-209ENST00000538995 C10orf53Q8N6V4 93 aa10.1□□□□□ -0.79
RTN3-209ENST00000538995 OR4D11Q8NGI4 311 aa10.1□□□□□ -0.79
RTN3-209ENST00000538995 OR5J2Q8NH18 312 aa10.1□□□□□ -0.79
RTN3-209ENST00000538995 VANGL1Q8TAA9 524 aaPredicted RBP10.1□□□□□ -0.79
RTN3-209ENST00000538995 ZNF583Q96ND8 569 aa10.1□□□□□ -0.79
RTN3-209ENST00000538995 MOGAT1Q96PD6 335 aa10.1□□□□□ -0.79
RTN3-209ENST00000538995 SLC38A2Q96QD8 506 aa10.1□□□□□ -0.79
RTN3-209ENST00000538995 KATNB1Q9BVA0 655 aa10.1□□□□□ -0.79
RTN3-209ENST00000538995 NELFAQ9H3P2 528 aa10.1□□□□□ -0.79
RTN3-209ENST00000538995 GSX1Q9H4S2 264 aaPredicted RBP10.1□□□□□ -0.79
RTN3-209ENST00000538995 GPR35Q9HC97 309 aa10.1□□□□□ -0.79
RTN3-209ENST00000538995 CBLN4Q9NTU7 201 aa10.1□□□□□ -0.79
RTN3-209ENST00000538995 SLC7A7Q9UM01 511 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms