RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 OR13H1Q8NG92 308 aa17.58■□□□□ 0.4
VPS28-213ENST00000530983 NXPE2Q96DL1 559 aa17.58■□□□□ 0.4
VPS28-213ENST00000530983 Q96M85 177 aa17.58■□□□□ 0.4
VPS28-213ENST00000530983 NANSQ9NR45 359 aa17.58■□□□□ 0.4
VPS28-213ENST00000530983 YBX2Q9Y2T7 364 aaKnown RBP17.58■□□□□ 0.4
VPS28-213ENST00000530983 V9GY05 133 aa17.58■□□□□ 0.4
VPS28-213ENST00000530983 TGM6O95932 706 aa17.57■□□□□ 0.4
VPS28-213ENST00000530983 CTHP32929 405 aa17.57■□□□□ 0.4
VPS28-213ENST00000530983 GPR3P46089 330 aa17.57■□□□□ 0.4
VPS28-213ENST00000530983 PGDP52209 483 aa17.57■□□□□ 0.4
VPS28-213ENST00000530983 GRK1Q15835 563 aa17.57■□□□□ 0.4
VPS28-213ENST00000530983 ZNF542PQ5EBM4 170 aa17.57■□□□□ 0.4
VPS28-213ENST00000530983 CLLU1Q5K131 121 aa17.57■□□□□ 0.4
VPS28-213ENST00000530983 NLRC3Q7RTR2 1065 aa17.57■□□□□ 0.4
VPS28-213ENST00000530983 KCTD20Q7Z5Y7 419 aa17.57■□□□□ 0.4
VPS28-213ENST00000530983 FRMD1Q8N878 549 aa17.57■□□□□ 0.4
VPS28-213ENST00000530983 ZNF511Q8NB15 262 aa17.57■□□□□ 0.4
VPS28-213ENST00000530983 OR2T35Q8NGX2 323 aa17.57■□□□□ 0.4
VPS28-213ENST00000530983 C16orf52Q8NHV5 167 aa17.57■□□□□ 0.4
VPS28-213ENST00000530983 TSSK2Q96PF2 358 aa17.57■□□□□ 0.4
VPS28-213ENST00000530983 GAS2L1Q99501 681 aaPredicted RBP17.57■□□□□ 0.4
VPS28-213ENST00000530983 METTL17Q9H7H0 456 aaPredicted RBP17.57■□□□□ 0.4
VPS28-213ENST00000530983 AKAP7Q9P0M2 348 aaPredicted RBP17.57■□□□□ 0.4
VPS28-213ENST00000530983 KLHL9Q9P2J3 617 aa17.57■□□□□ 0.4
VPS28-213ENST00000530983 CLDN16Q9Y5I7 305 aa17.57■□□□□ 0.4
VPS28-213ENST00000530983 MYO9BQ13459 2157 aa17.57■□□□□ 0.4
VPS28-213ENST00000530983 PRAMEF2O60811 474 aa17.56■□□□□ 0.4
VPS28-213ENST00000530983 ECDO95905 644 aaPredicted RBP17.56■□□□□ 0.4
VPS28-213ENST00000530983 PSMD4P55036 377 aaKnown RBP17.56■□□□□ 0.4
VPS28-213ENST00000530983 PRPS1P60891 318 aa17.56■□□□□ 0.4
VPS28-213ENST00000530983 RPS15P62841 145 aaKnown RBP17.56■□□□□ 0.4
VPS28-213ENST00000530983 ERV3-1Q14264 604 aa17.56■□□□□ 0.4
VPS28-213ENST00000530983 PWWP2BQ6NUJ5 590 aa17.56■□□□□ 0.4
VPS28-213ENST00000530983 OR10A4Q9H209 315 aa17.56■□□□□ 0.4
VPS28-213ENST00000530983 RXFP3Q9NSD7 469 aa17.56■□□□□ 0.4
VPS28-213ENST00000530983 OR5V1Q9UGF6 321 aa17.56■□□□□ 0.4
VPS28-213ENST00000530983 FOXJ3Q9UPW0 622 aa17.56■□□□□ 0.4
VPS28-213ENST00000530983 KRT33AO76009 404 aa17.56■□□□□ 0.4
VPS28-213ENST00000530983 TOXO94900 526 aa17.56■□□□□ 0.4
VPS28-213ENST00000530983 AKT2P31751 481 aa17.56■□□□□ 0.4
VPS28-213ENST00000530983 AQP2P41181 271 aa17.56■□□□□ 0.4
VPS28-213ENST00000530983 BTG2P78543 158 aa17.56■□□□□ 0.4
VPS28-213ENST00000530983 IGLV3-21P80748 117 aaPredicted RBP17.56■□□□□ 0.4
VPS28-213ENST00000530983 MAT1AQ00266 395 aaKnown RBP17.56■□□□□ 0.4
VPS28-213ENST00000530983 ELFN2Q5R3F8 820 aa17.56■□□□□ 0.4
VPS28-213ENST00000530983 AVL9Q8NBF6 648 aa17.56■□□□□ 0.4
VPS28-213ENST00000530983 SYNPRQ8TBG9 265 aa17.56■□□□□ 0.4
VPS28-213ENST00000530983 PIGKQ92643 395 aa17.56■□□□□ 0.4
VPS28-213ENST00000530983 PBX4Q9BYU1 374 aa17.56■□□□□ 0.4
VPS28-213ENST00000530983 KLHDC2Q9Y2U9 406 aa17.56■□□□□ 0.4
VPS28-213ENST00000530983 OR10H1Q9Y4A9 318 aa17.56■□□□□ 0.4
VPS28-213ENST00000530983 BLOC1S5-TXNDC5H3BN57 136 aa17.55■□□□□ 0.4
VPS28-213ENST00000530983 CTNSO60931 367 aa17.55■□□□□ 0.4
VPS28-213ENST00000530983 RPP14O95059 124 aaKnown RBP17.55■□□□□ 0.4
VPS28-213ENST00000530983 TNFP01375 233 aa17.55■□□□□ 0.4
VPS28-213ENST00000530983 OR8G3PP0DMU2 310 aa17.55■□□□□ 0.4
VPS28-213ENST00000530983 PTHLHP12272 177 aa17.55■□□□□ 0.4
VPS28-213ENST00000530983 RNH1P13489 461 aaKnown RBP17.55■□□□□ 0.4
VPS28-213ENST00000530983 APOOLQ6UXV4 268 aa17.55■□□□□ 0.4
VPS28-213ENST00000530983 FAM122BQ7Z309 247 aa17.55■□□□□ 0.4
VPS28-213ENST00000530983 OOSP2Q86WS3 158 aa17.55■□□□□ 0.4
VPS28-213ENST00000530983 FCAMRQ8WWV6 532 aa17.55■□□□□ 0.4
VPS28-213ENST00000530983 RBP7Q96R05 134 aa17.55■□□□□ 0.4
VPS28-213ENST00000530983 SLC19A3Q9BZV2 496 aa17.55■□□□□ 0.4
VPS28-213ENST00000530983 SEMA6CQ9H3T2 930 aa17.55■□□□□ 0.4
VPS28-213ENST00000530983 CDCP1Q9H5V8 836 aa17.55■□□□□ 0.4
VPS28-213ENST00000530983 POMT2Q9UKY4 750 aa17.55■□□□□ 0.4
VPS28-213ENST00000530983 ERVK-19Q9WJR5 959 aa17.55■□□□□ 0.4
VPS28-213ENST00000530983 TDRD6O60522 2096 aaKnown RBP17.55■□□□□ 0.4
VPS28-213ENST00000530983 KIR2DS5A0A0G2JLQ3 304 aa17.55■□□□□ 0.4
VPS28-213ENST00000530983 A0A0G2JNG1 304 aa17.55■□□□□ 0.4
VPS28-213ENST00000530983 NAP1L6A6NFF2 107 aa17.55■□□□□ 0.4
VPS28-213ENST00000530983 KIR2DS3K7RE56 304 aa17.55■□□□□ 0.4
VPS28-213ENST00000530983 PRAF2O60831 178 aa17.55■□□□□ 0.4
VPS28-213ENST00000530983 ITGA10O75578 1167 aa17.55■□□□□ 0.4
VPS28-213ENST00000530983 CFDP00746 253 aaPredicted RBP17.55■□□□□ 0.4
VPS28-213ENST00000530983 ATF4P18848 351 aaPredicted RBP17.55■□□□□ 0.4
VPS28-213ENST00000530983 KIR2DS5Q14953 304 aa17.55■□□□□ 0.4
VPS28-213ENST00000530983 TMEM92Q6UXU6 159 aa17.55■□□□□ 0.4
VPS28-213ENST00000530983 STAC2Q6ZMT1 411 aa17.55■□□□□ 0.4
VPS28-213ENST00000530983 EID2Q8N6I1 236 aa17.55■□□□□ 0.4
VPS28-213ENST00000530983 EXD3Q8N9H8 876 aa17.55■□□□□ 0.4
VPS28-213ENST00000530983 CEP76Q8TAP6 659 aa17.55■□□□□ 0.4
VPS28-213ENST00000530983 LMF1Q96S06 567 aa17.55■□□□□ 0.4
VPS28-213ENST00000530983 A0A1B0GUH1 482 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 ANKRD20A5PA0PJZ0 165 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 TMEM72A0PK05 275 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 ARPC1BO15143 372 aaKnown RBP17.54■□□□□ 0.4
VPS28-213ENST00000530983 UPK3AO75631 287 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 IFNA7P01567 189 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 RRASP10301 218 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 ADRA2CP18825 462 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 EN2P19622 333 aaPredicted RBP17.54■□□□□ 0.4
VPS28-213ENST00000530983 PBX2P40425 430 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 AP3S2P59780 193 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 PUDPQ08623 228 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 PRTGQ2VWP7 1150 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 TMEM69Q5SWH9 247 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 C9orf50Q5SZB4 431 aa17.54■□□□□ 0.4
VPS28-213ENST00000530983 SLC6A19Q695T7 634 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms