RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 ZNF48Q96MX3 618 aaPredicted RBP9.33□□□□□ -0.92
DDX41-216ENST00000513562 GPA33Q99795 319 aa9.33□□□□□ -0.92
DDX41-216ENST00000513562 GATA5Q9BWX5 397 aaPredicted RBP9.33□□□□□ -0.92
DDX41-216ENST00000513562 PSMC3IPQ9P2W1 217 aaPredicted RBP9.33□□□□□ -0.92
DDX41-216ENST00000513562 DUSP13Q9UII6 198 aa9.33□□□□□ -0.92
DDX41-216ENST00000513562 WIPI2Q9Y4P8 454 aa9.33□□□□□ -0.92
DDX41-216ENST00000513562 PPIAL4EA0A075B759 164 aa9.32□□□□□ -0.92
DDX41-216ENST00000513562 PPIAL4CA0A0B4J2A2 164 aa9.32□□□□□ -0.92
DDX41-216ENST00000513562 C17orf100A8MU93 164 aa9.32□□□□□ -0.92
DDX41-216ENST00000513562 FTCDNL1E5RQL4 147 aa9.32□□□□□ -0.92
DDX41-216ENST00000513562 PPIAL4DF5H284 164 aa9.32□□□□□ -0.92
DDX41-216ENST00000513562 RNASET2O00584 256 aaKnown RBP9.32□□□□□ -0.92
DDX41-216ENST00000513562 CHRNGP07510 517 aa9.32□□□□□ -0.92
DDX41-216ENST00000513562 TFPTP0C1Z6 253 aa9.32□□□□□ -0.92
DDX41-216ENST00000513562 PPIAL4FP0DN26 164 aa9.32□□□□□ -0.92
DDX41-216ENST00000513562 PNMTP11086 282 aa9.32□□□□□ -0.92
DDX41-216ENST00000513562 ZNF43P17038 809 aa9.32□□□□□ -0.92
DDX41-216ENST00000513562 MDKP21741 143 aaPredicted RBP9.32□□□□□ -0.92
DDX41-216ENST00000513562 RPS4Y1P22090 263 aaKnown RBP9.32□□□□□ -0.92
DDX41-216ENST00000513562 CRYBB2P43320 205 aa9.32□□□□□ -0.92
DDX41-216ENST00000513562 GALK2Q01415 458 aa9.32□□□□□ -0.92
DDX41-216ENST00000513562 PCGF3Q3KNV8 242 aa9.32□□□□□ -0.92
DDX41-216ENST00000513562 GLIPR1L2Q4G1C9 344 aa9.32□□□□□ -0.92
DDX41-216ENST00000513562 GPAT3Q53EU6 434 aa9.32□□□□□ -0.92
DDX41-216ENST00000513562 C6orf136Q5SQH8 315 aa9.32□□□□□ -0.92
DDX41-216ENST00000513562 MRPL2Q5T653 305 aaKnown RBP9.32□□□□□ -0.92
DDX41-216ENST00000513562 IL23RQ5VWK5 629 aa9.32□□□□□ -0.92
DDX41-216ENST00000513562 SAXO2Q658L1 398 aa9.32□□□□□ -0.92
DDX41-216ENST00000513562 OR4F3Q6IEY1 312 aa9.32□□□□□ -0.92
DDX41-216ENST00000513562 LEG1Q6P5S2 330 aa9.32□□□□□ -0.92
DDX41-216ENST00000513562 C10orf107Q8IVU9 208 aa9.32□□□□□ -0.92
DDX41-216ENST00000513562 TMEM123Q8N131 208 aa9.32□□□□□ -0.92
DDX41-216ENST00000513562 KDM8Q8N371 416 aa9.32□□□□□ -0.92
DDX41-216ENST00000513562 FNDC5Q8NAU1 212 aa9.32□□□□□ -0.92
DDX41-216ENST00000513562 DEFB108BQ8NET1 73 aa9.32□□□□□ -0.92
DDX41-216ENST00000513562 OR4A15Q8NGL6 344 aa9.32□□□□□ -0.92
DDX41-216ENST00000513562 IFT81Q8WYA0 676 aa9.32□□□□□ -0.92
DDX41-216ENST00000513562 TAF15Q92804 592 aaKnown RBP eCLIP9.32□□□□□ -0.92
DDX41-216ENST00000513562 POP5Q969H6 163 aaKnown RBP9.32□□□□□ -0.92
DDX41-216ENST00000513562 SLC25A28Q96A46 364 aa9.32□□□□□ -0.92
DDX41-216ENST00000513562 C3orf30Q96M34 536 aa9.32□□□□□ -0.92
DDX41-216ENST00000513562 SLC38A1Q9H2H9 487 aa9.32□□□□□ -0.92
DDX41-216ENST00000513562 MMP27Q9H306 513 aa9.32□□□□□ -0.92
DDX41-216ENST00000513562 HINT3Q9NQE9 182 aaKnown RBP9.32□□□□□ -0.92
DDX41-216ENST00000513562 PLEK2Q9NYT0 353 aa9.32□□□□□ -0.92
DDX41-216ENST00000513562 B3GAT1Q9P2W7 334 aa9.32□□□□□ -0.92
DDX41-216ENST00000513562 ZNF69Q9UC07 566 aa9.32□□□□□ -0.92
DDX41-216ENST00000513562 PRDM4Q9UKN5 801 aa9.32□□□□□ -0.92
DDX41-216ENST00000513562 NUP50Q9UKX7 468 aa9.32□□□□□ -0.92
DDX41-216ENST00000513562 MMP24Q9Y5R2 645 aa9.32□□□□□ -0.92
DDX41-216ENST00000513562 RYR3Q15413 4870 aa9.32□□□□□ -0.92
DDX41-216ENST00000513562 NBEAL2Q6ZNJ1 2754 aa9.32□□□□□ -0.92
DDX41-216ENST00000513562 IGHV1-69-2A0A0G2JMI3 117 aa9.31□□□□□ -0.92
DDX41-216ENST00000513562 A0A1W2PPM1 405 aa9.31□□□□□ -0.92
DDX41-216ENST00000513562 CLDN25C9JDP6 229 aa9.31□□□□□ -0.92
DDX41-216ENST00000513562 HMGN4O00479 90 aa9.31□□□□□ -0.92
DDX41-216ENST00000513562 TRAF3IP2O43734 574 aaPredicted RBP9.31□□□□□ -0.92
DDX41-216ENST00000513562 FZD7O75084 574 aa9.31□□□□□ -0.92
DDX41-216ENST00000513562 CD79AP11912 226 aa9.31□□□□□ -0.92
DDX41-216ENST00000513562 UQCRC2P22695 453 aa9.31□□□□□ -0.92
DDX41-216ENST00000513562 CRHR1P34998 444 aa9.31□□□□□ -0.92
DDX41-216ENST00000513562 RAD52P43351 418 aa9.31□□□□□ -0.92
DDX41-216ENST00000513562 CCL8P80075 99 aa9.31□□□□□ -0.92
DDX41-216ENST00000513562 TEKQ02763 1124 aa9.31□□□□□ -0.92
DDX41-216ENST00000513562 GNA13Q14344 377 aa9.31□□□□□ -0.92
DDX41-216ENST00000513562 SLC9A3R2Q15599 337 aa9.31□□□□□ -0.92
DDX41-216ENST00000513562 NKPD1Q17RQ9 610 aa9.31□□□□□ -0.92
DDX41-216ENST00000513562 PGS1Q32NB8 556 aa9.31□□□□□ -0.92
DDX41-216ENST00000513562 ALKBH6Q3KRA9 238 aa9.31□□□□□ -0.92
DDX41-216ENST00000513562 ARMCX4Q5H9R4 360 aa9.31□□□□□ -0.92
DDX41-216ENST00000513562 WBP2NLQ6ICG8 309 aa9.31□□□□□ -0.92
DDX41-216ENST00000513562 ZNF627Q7L945 461 aa9.31□□□□□ -0.92
DDX41-216ENST00000513562 RETREG3Q86VR2 466 aa9.31□□□□□ -0.92
DDX41-216ENST00000513562 TREML1Q86YW5 311 aa9.31□□□□□ -0.92
DDX41-216ENST00000513562 WDFY1Q8IWB7 410 aa9.31□□□□□ -0.92
DDX41-216ENST00000513562 ZNF440Q8IYI8 595 aa9.31□□□□□ -0.92
DDX41-216ENST00000513562 ANKFN1Q8N957 763 aa9.31□□□□□ -0.92
DDX41-216ENST00000513562 CCDC63Q8NA47 563 aa9.31□□□□□ -0.92
DDX41-216ENST00000513562 PIK3C3Q8NEB9 887 aa9.31□□□□□ -0.92
DDX41-216ENST00000513562 OR8J2Q8NGG1 315 aa9.31□□□□□ -0.92
DDX41-216ENST00000513562 MFSD8Q8NHS3 518 aa9.31□□□□□ -0.92
DDX41-216ENST00000513562 MGARPQ8TDB4 240 aa9.31□□□□□ -0.92
DDX41-216ENST00000513562 WFDC12Q8WWY7 111 aa9.31□□□□□ -0.92
DDX41-216ENST00000513562 NEURL3Q96EH8 262 aa9.31□□□□□ -0.92
DDX41-216ENST00000513562 TRNT1Q96Q11 434 aaKnown RBP9.31□□□□□ -0.92
DDX41-216ENST00000513562 OR2M2Q96R28 347 aa9.31□□□□□ -0.92
DDX41-216ENST00000513562 PTDSS2Q9BVG9 487 aa9.31□□□□□ -0.92
DDX41-216ENST00000513562 NKIRAS2Q9NYR9 191 aa9.31□□□□□ -0.92
DDX41-216ENST00000513562 ZNF224Q9NZL3 707 aa9.31□□□□□ -0.92
DDX41-216ENST00000513562 PDP1Q9P0J1 537 aaPredicted RBP9.31□□□□□ -0.92
DDX41-216ENST00000513562 TAAR3PQ9P1P4 343 aa9.31□□□□□ -0.92
DDX41-216ENST00000513562 SLC7A8Q9UHI5 535 aa9.31□□□□□ -0.92
DDX41-216ENST00000513562 IGLV3-9A0A075B6K5 115 aa9.3□□□□□ -0.92
DDX41-216ENST00000513562 A0A096LPI6 279 aa9.3□□□□□ -0.92
DDX41-216ENST00000513562 CDHR4A6H8M9 788 aa9.3□□□□□ -0.92
DDX41-216ENST00000513562 RIPK2O43353 540 aa9.3□□□□□ -0.92
DDX41-216ENST00000513562 AHSA1O95433 338 aa9.3□□□□□ -0.92
DDX41-216ENST00000513562 G6PDP11413 515 aa9.3□□□□□ -0.92
DDX41-216ENST00000513562 IL7RP16871 459 aa9.3□□□□□ -0.92
DDX41-216ENST00000513562 CASQ1P31415 396 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms