RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 WDSUB1Q8N9V3 476 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 TEX45Q8NA69 505 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 DNAAF1Q8NEP3 725 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 WDR20Q8TBZ3 569 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 ZNF418Q8TF45 676 aaPredicted RBP3.41□□□□□ -1.86
USP54-217ENST00000498213 PYROXD1Q8WU10 500 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 TAF15Q92804 592 aaKnown RBP eCLIP3.41□□□□□ -1.86
USP54-217ENST00000498213 CPNE4Q96A23 557 aaPredicted RBP3.41□□□□□ -1.86
USP54-217ENST00000498213 STARD4Q96DR4 205 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 KTI12Q96EK9 354 aaPredicted RBP3.41□□□□□ -1.86
USP54-217ENST00000498213 PGM2Q96G03 612 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 JSRP1Q96MG2 331 aaPredicted RBP3.41□□□□□ -1.86
USP54-217ENST00000498213 SFXN2Q96NB2 322 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 F2RL3Q96RI0 385 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 CCT8L2Q96SF2 557 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 RBBP8Q99708 897 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 TUBA1CQ9BQE3 449 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 SLC25A33Q9BSK2 321 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 C1QTNF4Q9BXJ3 329 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 ZNF717Q9BY31 904 aaPredicted RBP3.41□□□□□ -1.86
USP54-217ENST00000498213 POTEKPQ9BYX7 375 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 NPFFR1Q9GZQ6 430 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 AICDAQ9GZX7 198 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 GIN1Q9NXP7 522 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 CD274Q9NZQ7 290 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 KLRF1Q9NZS2 232 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 GRHPRQ9UBQ7 328 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 ASIC3Q9UHC3 531 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 SNX6Q9UNH7 406 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 ANGPTL3Q9Y5C1 460 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 PCDHGB5Q9Y5G0 923 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 MAGED1Q9Y5V3 778 aaPredicted RBP3.41□□□□□ -1.86
USP54-217ENST00000498213 SAR1BQ9Y6B6 198 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 KIAA1549Q9HCM3 1950 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 HEATR5AQ86XA9 2040 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 A0A1W2PQD3 144 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 FAM159BA6NKW6 160 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 CCT8L1PA6NM43 557 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 C4orf51C9J302 202 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 G3V4G9 280 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 H7C417 338 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 PLPP1O14494 284 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 TAPBPO15533 448 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 ZNF354AO60765 605 aaPredicted RBP3.4□□□□□ -1.87
USP54-217ENST00000498213 ACSL3O95573 720 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 KRT6AP02538 564 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 CLPSP04118 112 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 KRT6BP04259 564 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 TUBBP07437 444 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 GUSBP08236 651 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 DHRS4L1P0CG22 281 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 EPORP19235 508 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 S1PR1P21453 382 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 USF1P22415 310 aaPredicted RBP3.4□□□□□ -1.87
USP54-217ENST00000498213 ME2P23368 584 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 IVDP26440 423 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 IL12BP29460 328 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 ELK3P41970 407 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 PAFAH1B1P43034 410 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 KRT6CP48668 564 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 MVDP53602 400 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 CTBP2P56545 445 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 FBXW4P57775 412 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 ERVFC1-1P60608 527 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 TUBA1BP68363 451 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 DR1Q01658 176 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 CSTF3Q12996 717 aaKnown RBP3.4□□□□□ -1.87
USP54-217ENST00000498213 GGTLC2Q14390 218 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 PDK3Q15120 406 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 TOMM20Q15388 145 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 ZNHIT3Q15649 155 aaPredicted RBP3.4□□□□□ -1.87
USP54-217ENST00000498213 DECR1Q16698 335 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 WHAMMP3Q1A5X7 153 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 TMEM44Q2T9K0 475 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 SPIN4Q56A73 249 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 TEX35Q5T0J7 233 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 FAM182AQ5T1J6 154 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 AGAP6Q5VW22 663 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 TTC27Q6P3X3 843 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 CLEC2AQ6UVW9 174 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 RNF165Q6ZSG1 346 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 METTL4Q8N3J2 472 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 GTPBP8Q8N3Z3 284 aaPredicted RBP3.4□□□□□ -1.87
USP54-217ENST00000498213 C17orf78Q8N4C9 275 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 ZNF525Q8N782 197 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 OR4K17Q8NGC6 315 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 OTULINQ96BN8 352 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 INTS12Q96CB8 462 aaKnown RBP3.4□□□□□ -1.87
USP54-217ENST00000498213 MTBPQ96DY7 904 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 OMA1Q96E52 524 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 ADGRG7Q96K78 797 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 VSTM2LQ96N03 204 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 FAM111AQ96PZ2 611 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 ATOH8Q96SQ7 321 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 CTDSP1Q9GZU7 261 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 HOXD1Q9GZZ0 328 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 MMP27Q9H306 513 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 ELOVL6Q9H5J4 265 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 ANKZF1Q9H8Y5 726 aa3.4□□□□□ -1.87
USP54-217ENST00000498213 PDP1Q9P0J1 537 aaPredicted RBP3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms